def bio_reverse_comp( fname ):
fasta = get_index( fname, tag='bio', flag='c')
keys = fasta.keys()
keys.sort()
for rec in keys:
seq = fasta[rec].seq.reverse_complement()
sub = seq.tostring()
fasta.close()
def pygr_reverse_comp( fname ):
fasta = seqdb.SequenceFileDB( fname )
keys = fasta.keys()
keys.sort()
for rec in keys:
# force full reverse complement
seq = str(-fasta[rec])
sub = seq[:10]
def bio_reverse_comp(fname):
fasta = get_index(fname, tag='bio', flag='c')
keys = fasta.keys()
keys.sort()
for rec in keys:
seq = fasta[rec].seq.reverse_complement()
sub = seq.tostring()
fasta.close()
def pygr_reverse_comp(fname):
fasta = seqdb.SequenceFileDB(fname)
keys = fasta.keys()
keys.sort()
for rec in keys:
# force full reverse complement
seq = str(-fasta[rec])
sub = seq[:10]
def cogent_reverse_comp( fname ):
fasta = get_index( fname, tag='cogent', flag='c')
keys = fasta.keys()
keys.sort()
for rec in keys:
seq = fasta[rec].reversecomplement()
seq = str(seq)
sub = seq[:10]
fasta.close()
def cogent_reverse_comp(fname):
fasta = get_index(fname, tag='cogent', flag='c')
keys = fasta.keys()
keys.sort()
for rec in keys:
seq = fasta[rec].reversecomplement()
seq = str(seq)
sub = seq[:10]
fasta.close()