def train_model(subdataset, species):
dataset_dir = os.path.join(dasaset_base, subdataset, species)
dataset = CustomDataset(
dataset_dir, 'training',
img_generator=img_data_gen, mask_generator=mask_data_gen,
preprocessing_function=preprocess_input
)
dataset_valid = CustomDataset(
dataset_dir, 'validation',
preprocessing_function=preprocess_input
)
train_dataset = tf.data.Dataset.from_generator(
lambda: dataset,
output_types=(tf.float32, tf.float32),
output_shapes=([img_h, img_w, 3], [img_h, img_w, 1])
).batch(bs).repeat()
valid_dataset = tf.data.Dataset.from_generator(
lambda: dataset_valid,
output_types=(tf.float32, tf.float32),
output_shapes=([img_h, img_w, 3], [img_h, img_w, 1])
).batch(bs).repeat()
num_classes = 3
model = create_model(img_h, img_w, num_classes=num_classes)
model.summary()
# Loss
# Sparse Categorical Crossentropy to use integers (mask) instead of one-hot encoded labels
loss = tf.keras.losses.SparseCategoricalCrossentropy()
# learning rate
optimizer = tf.keras.optimizers.Adam(learning_rate=lr)
# Validation metrics
metrics = ['accuracy', gen_meanIoU(num_classes)]
# Compile Model
model.compile(optimizer=optimizer, loss=loss, metrics=metrics)
# ---- Callbacks ----
exps_dir = "experiments"
if not os.path.exists(exps_dir):
os.makedirs(exps_dir)
model_dir = os.path.join(exps_dir, MODEL_NAME)
if not os.path.exists(model_dir):
os.makedirs(model_dir)
exp_dir = os.path.join(model_dir, subdataset, species, str(now))
if not os.path.exists(exp_dir):
os.makedirs(exp_dir)
callbacks_list = []
# Model checkpoint
if CHECKPOINTS:
callbacks_list.append(callbacks.checkpoints(exp_dir))
# Early stopping
if EARLY_STOP:
callbacks_list.append(callbacks.early_stopping(patience=10))
# Save best model
# ----------------
best_checkpoint_path = None
if SAVE_BEST:
best_checkpoint_path, save_best_callback = callbacks.save_best(exp_dir)
callbacks_list.append(save_best_callback)
model.fit(
x=train_dataset,
epochs=epochs,
steps_per_epoch=len(dataset),
validation_data=valid_dataset,
validation_steps=len(dataset_valid),
callbacks=callbacks_list
)
if PLOT:
if best_checkpoint_path:
model.load_weights(best_checkpoint_path)
# ---- Prediction ----
plot_predictions(model, valid_dataset, num_classes)
if not os.path.exists(exp_dir):
os.makedirs(exp_dir)
callbacks_list = []
# Model checkpoint
if CHECKPOINTS:
callbacks_list.append(callbacks.checkpoints(exp_dir))
# Early stopping
if EARLY_STOP:
callbacks_list.append(callbacks.early_stopping(patience=7))
# Tensorboard
if TENSORBOARD:
callbacks_list.append(callbacks.tensorboard(exp_dir))
# Save best model
# ----------------
if SAVE_BEST:
callbacks_list.append(callbacks.save_best(exp_dir))
model.fit(
x=train_dataset,
epochs=1000,
steps_per_epoch=len(train_flow),
validation_data=validation_dataset,
validation_steps=len(validation_flow),
callbacks=callbacks_list,
)
os.makedirs(exp_dir)
current_k_idx_dir = os.path.join(exp_dir, f"k_{i}")
if not os.path.exists(current_k_idx_dir):
os.makedirs(current_k_idx_dir)
callbacks_list = []
# Early stopping
if EARLY_STOP:
callbacks_list.append(callbacks.early_stopping(patience=10))
# Save best model
# ----------------
best_checkpoint_path = None
if SAVE_BEST:
best_checkpoint_path, save_best_callback = callbacks.save_best(current_k_idx_dir)
callbacks_list.append(save_best_callback)
model.fit(
x=train_dataset,
epochs=epochs,
steps_per_epoch=len(dataset) // bs,
validation_data=valid_dataset,
validation_steps=len(dataset_valid) // bs,
callbacks=callbacks_list
)
# Clear tensorflow session to release memory, otherwise it keeps rising after each fold
K.clear_session()
