def test_validate_subtool_metadata(self):
validate_subtool_metadata = metadata_validator_factory(SubtoolMetadata)
metadata_path = get_tool_metadata('STAR',
'2.5',
subtool_name='alignReads')
validate_subtool_metadata(metadata_path)
return
def test_validate_parent_tool_metadata_fail(self):
validate_parent_metadata = metadata_validator_factory(
ParentToolMetadata)
metadata_path = get_tool_metadata('cat',
'8.x',
parent=True,
base_dir=self.invalid_content_dir)
with self.assertRaises(AttributeError):
validate_parent_metadata(metadata_path)
return
def test_validate_subtool_metadata_fail(self):
validate_subtool_metadata = metadata_validator_factory(SubtoolMetadata)
# metadata_path = Path.cwd() / 'tests/test_files/test_content/invalid_content/cwl-tools/samtools/1.9/samtools_view/samtools-view-metadata.yaml' # Works for now. # subtool name not in parent featurelist.
metadata_path = get_tool_metadata('samtools',
'1.x',
subtool_name='view',
base_dir=self.invalid_content_dir)
assert metadata_path.exists()
with self.assertRaises(ValueError):
validate_subtool_metadata(metadata_path)
return
def test_validate_parent_tool_metadata(self):
validate_parent_metadata = metadata_validator_factory(
ParentToolMetadata)
metadata_path = get_tool_metadata('STAR', '2.5', parent=True)
validate_parent_metadata(metadata_path)