def make_phase_interpolation_matrix(n_intervals, tau_evaluation_points):
if isinstance(tau_evaluation_points, list):
tau_evaluation_points = casadi.DM(tau_evaluation_points)
assert isinstance(tau_evaluation_points, casadi.DM)
assert tau_evaluation_points.numel() == tau_evaluation_points.size1()
assert float(casadi.mmin(
casadi.diff(tau_evaluation_points) > 0)) == 1.0 # Must be ascending
assert float(casadi.mmin(tau_evaluation_points)) >= 0.0
assert float(casadi.mmax(tau_evaluation_points)) <= 1.0
tau_evaluation_points_scaled = [
float(f) * n_intervals for f in casadi.vertsplit(tau_evaluation_points)
]
interval_indices = [int(f) for f in tau_evaluation_points_scaled]
interval_values = [f - int(f) for f in tau_evaluation_points_scaled]
if interval_indices[-1] == n_intervals:
interval_indices[-1] = n_intervals - 1
interval_values[-1] = 1.0
interval_interpolation_matrix = make_interval_interpolation_matrix(
interval_values)
phase_interpolation_matrix = casadi.DM(tau_evaluation_points.numel(),
(n_intervals *
(collocation.n_nodes - 1) + 1))
for i in range(len(interval_values)):
column_idx = interval_indices[i] * (collocation.n_nodes - 1)
phase_interpolation_matrix[i, (column_idx):(
column_idx + collocation.n_nodes)] = casadi.DM(
interval_interpolation_matrix[i]).T
return phase_interpolation_matrix
def min(a):
"""
Returns the minimum value of an array
"""
try:
return _onp.min(a)
except TypeError:
return _cas.mmin(a)
def _convert(self, symbol, t, y, y_dot, inputs):
""" See :meth:`CasadiConverter.convert()`. """
if isinstance(
symbol,
(
pybamm.Scalar,
pybamm.Array,
pybamm.Time,
pybamm.InputParameter,
pybamm.ExternalVariable,
),
):
return casadi.MX(symbol.evaluate(t, y, y_dot, inputs))
elif isinstance(symbol, pybamm.StateVector):
if y is None:
raise ValueError("Must provide a 'y' for converting state vectors")
return casadi.vertcat(*[y[y_slice] for y_slice in symbol.y_slices])
elif isinstance(symbol, pybamm.StateVectorDot):
if y_dot is None:
raise ValueError("Must provide a 'y_dot' for converting state vectors")
return casadi.vertcat(*[y_dot[y_slice] for y_slice in symbol.y_slices])
elif isinstance(symbol, pybamm.BinaryOperator):
left, right = symbol.children
# process children
converted_left = self.convert(left, t, y, y_dot, inputs)
converted_right = self.convert(right, t, y, y_dot, inputs)
if isinstance(symbol, pybamm.Minimum):
return casadi.fmin(converted_left, converted_right)
if isinstance(symbol, pybamm.Maximum):
return casadi.fmax(converted_left, converted_right)
# _binary_evaluate defined in derived classes for specific rules
return symbol._binary_evaluate(converted_left, converted_right)
elif isinstance(symbol, pybamm.UnaryOperator):
converted_child = self.convert(symbol.child, t, y, y_dot, inputs)
if isinstance(symbol, pybamm.AbsoluteValue):
return casadi.fabs(converted_child)
return symbol._unary_evaluate(converted_child)
elif isinstance(symbol, pybamm.Function):
converted_children = [
self.convert(child, t, y, y_dot, inputs) for child in symbol.children
]
# Special functions
if symbol.function == np.min:
return casadi.mmin(*converted_children)
elif symbol.function == np.max:
return casadi.mmax(*converted_children)
elif symbol.function == np.abs:
return casadi.fabs(*converted_children)
elif symbol.function == np.sqrt:
return casadi.sqrt(*converted_children)
elif symbol.function == np.sin:
return casadi.sin(*converted_children)
elif symbol.function == np.arcsinh:
return casadi.arcsinh(*converted_children)
elif symbol.function == np.arccosh:
return casadi.arccosh(*converted_children)
elif symbol.function == np.tanh:
return casadi.tanh(*converted_children)
elif symbol.function == np.cosh:
return casadi.cosh(*converted_children)
elif symbol.function == np.sinh:
return casadi.sinh(*converted_children)
elif symbol.function == np.cos:
return casadi.cos(*converted_children)
elif symbol.function == np.exp:
return casadi.exp(*converted_children)
elif symbol.function == np.log:
return casadi.log(*converted_children)
elif symbol.function == np.sign:
return casadi.sign(*converted_children)
elif isinstance(symbol.function, (PchipInterpolator, CubicSpline)):
return casadi.interpolant("LUT", "bspline", [symbol.x], symbol.y)(
*converted_children
)
elif symbol.function.__name__.startswith("elementwise_grad_of_"):
differentiating_child_idx = int(symbol.function.__name__[-1])
# Create dummy symbolic variables in order to differentiate using CasADi
dummy_vars = [
casadi.MX.sym("y_" + str(i)) for i in range(len(converted_children))
]
func_diff = casadi.gradient(
symbol.differentiated_function(*dummy_vars),
dummy_vars[differentiating_child_idx],
)
# Create function and evaluate it using the children
casadi_func_diff = casadi.Function("func_diff", dummy_vars, [func_diff])
return casadi_func_diff(*converted_children)
# Other functions
else:
return symbol._function_evaluate(converted_children)
elif isinstance(symbol, pybamm.Concatenation):
converted_children = [
self.convert(child, t, y, y_dot, inputs) for child in symbol.children
]
if isinstance(symbol, (pybamm.NumpyConcatenation, pybamm.SparseStack)):
return casadi.vertcat(*converted_children)
# DomainConcatenation specifies a particular ordering for the concatenation,
# which we must follow
elif isinstance(symbol, pybamm.DomainConcatenation):
slice_starts = []
all_child_vectors = []
for i in range(symbol.secondary_dimensions_npts):
child_vectors = []
for child_var, slices in zip(
converted_children, symbol._children_slices
):
for child_dom, child_slice in slices.items():
slice_starts.append(symbol._slices[child_dom][i].start)
child_vectors.append(
child_var[child_slice[i].start : child_slice[i].stop]
)
all_child_vectors.extend(
[v for _, v in sorted(zip(slice_starts, child_vectors))]
)
return casadi.vertcat(*all_child_vectors)
else:
raise TypeError(
"""
Cannot convert symbol of type '{}' to CasADi. Symbols must all be
'linear algebra' at this stage.
""".format(
type(symbol)
)
)
