def converged(self):
"""Check if configuration is relaxed.
This is called when self.rundir[-1] is complete and not a constant volume job.
Convergence criteria is: at least 2 relaxation jobs are complete, and:
1) the last job completed with <= 3 ionic steps
or 2) the last two jobs had final E0 differ by less than
self.settings["nrg_convergence"]
"""
if len(self.rundir) >= 2:
if io.ionic_steps(self.rundir[-1]) <= 3:
return True
if self.settings["nrg_convergence"] != None:
if io.job_complete(self.rundir[-1]) and io.job_complete(
self.rundir[-2]):
osz_1 = io.Oszicar(os.path.join(self.rundir[-1],
"OSZICAR"))
osz_2 = io.Oszicar(os.path.join(self.rundir[-2],
"OSZICAR"))
if abs(osz_1.E[-1] -
osz_2.E[-1]) < self.settings["nrg_convergence"]:
return True
return False
def run_check(args):
'''
Checks if a VASP run run has finished
'''
## Look for a 'final' directory from relaxation runs and check
if os.path.exists('run.final') and job_complete('run.final'):
exit(0)
## Seems to be a simple job. Check current directory
if job_complete():
exit(0)
# Does not seem to be a completed vasp run
exit(1)
def status(self):
""" Determine the status of a vasp convergence series of runs. Individual runs in the series
are in directories labeled "run.0", "run.1", etc.
Returns a tuple: (status = "incomplete" or "complete" or "not_converging",
task = continuedir or "relax" or "constant" or None)
The first value is the status of the entire convergence.
The second value is the current task, where 'continuedir' is the path to a
vasp job directory that is not yet completed, "relax" indicates another
volume convergence job is required, and "constant" that a constant volume run is required.
"""
# check if all complete
if io.job_complete(self.finaldir):
return ("complete", None)
# check status of convergence runs
self.update_rundir()
# if not yet started
if len(self.rundir) == 0:
return ("incomplete", "setup")
# if the latest run is complete:
if io.job_complete(self.rundir[-1]):
# if it is a final constant volume run
if io.get_incar_tag("SYSTEM", self.rundir[-1]) != None:
if io.get_incar_tag("SYSTEM",
self.rundir[-1]).split()[-1].strip().lower(
) == "final":
# if io.get_incar_tag("ISIF", self.rundir[-1]) == 2 and \
# io.get_incar_tag("NSW", self.rundir[-1]) == 0 and \
# io.get_incar_tag("ISMEAR", self.rundir[-1]) == -5:
return ("complete", None)
# elif constant volume run (but not the final one)
if io.get_incar_tag("ISIF", self.rundir[-1]) in [0, 1, 2]:
if io.get_incar_tag("NSW", self.rundir[-1]) == len(
io.Oszicar(os.path.join(self.rundir[-1],
"OSZICAR")).E):
return ("incomplete", "relax"
) # static run hit NSW limit and so isn't "done"
else:
return ("incomplete", "constant")
# elif convergence criteria met
if self.converged():
return ("incomplete", "constant")
# elif not converging, return 'not_converging' error
if self.not_converging():
return ("not_converging", None)
# else continue relaxing
else:
return ("incomplete", "relax")
# elif not converging, return 'not_converging' error
elif self.not_converging():
return ("not_converging", None)
# else if the latest run is not complete, continue running it
return ("incomplete", self.rundir[-1])
def status(self):
""" Determine the status of a vasp relaxation series of runs. Individual runs in the series
are in directories labeled "run.0", "run.1", etc.
Returns a tuple: (status = "incomplete" or "complete" or "not_converging",
task = "setup" or "new_run" or None)
The first value is the status of the entire relaxation.
The second value is the current task, where
"setup" means to start running calculations in run.0 in the current folder
"new_run" indicates another calculation job is required as present run is incomplete and need to start a next run.
"""
# check if all complete
if io.job_complete(os.path.join(self.finaldir, "01")):
return ("complete", None)
# check status of relaxation runs
self.update_rundir()
# if not yet started
if len(self.rundir) == 0:
return ("incomplete", "setup")
# check if all complete
if io.job_complete(os.path.join(self.rundir[-1], "01")):
# if it is a final constant volume run
if io.get_incar_tag("SYSTEM", self.rundir[-1]) != None:
if io.get_incar_tag("SYSTEM",
self.rundir[-1]).split()[-1].strip().lower(
) == "final":
return ("complete", None)
# elif constant volume run (but not the final one)
if io.get_incar_tag("ISIF", self.rundir[-1]) in [0, 1, 2]:
if io.get_incar_tag("NSW", self.rundir[-1]) == len(
io.Oszicar(
os.path.join(self.rundir[-1], "01", "OSZICAR")).E):
print "first "
return ("incomplete", "new_run"
) # static run hit NSW limit and so isn't "done"
else:
return ("incomplete", "constant")
# elif convergence criteria met
if self.converged():
return ("incomplete", "constant")
# elif not converging, return 'not_converging' error
if self.not_converging():
return ("not_converging", None)
# else continue relaxing
else:
return ("incomplete", "new_run")
# elif not converging, return 'not_converging' error
elif self.not_converging():
return ("not_converging", None)
# else if the latest run is not complete, continue with a new run
return ("incomplete", 'new_run')
