def done(self, form_list, **kwargs):
""" Will add all missing links, stored in the tag groups field.
"""
tag_groups = self.get_selected_tag_groups()
unified_tag_groups = {}
num_added_links = 0
failed_links = {}
for eg, group in tag_groups.items():
for p, pdata in group['project_cgroots'].items():
# Iterate missing links
for ml in pdata['missing']:
try:
# Add missing link
wid = pdata['workspace']
oroot = ClassInstance.objects.get(pk=ml)
link_existing_classification(wid, self.request.user, p,
oroot)
unified_tag_groups[eg] = group
num_added_links = num_added_links + 1
except Exception as e:
failed_links[ml] = e
# Delete tag groups stored in session
self.clear_cache()
# Show final page
return render_to_response(
'catmaid/classification/admin_done.html', {
'tag_groups': unified_tag_groups,
'num_added_links': num_added_links,
'failed_links': failed_links,
})
def done(self, form_list, **kwargs):
""" Will add all missing links, stored in the tag groups field.
"""
tag_groups = self.get_selected_tag_groups()
unified_tag_groups = {}
num_added_links = 0
failed_links = {}
for eg, group in tag_groups.items():
for pid, pdata in group['project_cgroots'].items():
# Iterate missing links
for ml in pdata['missing']:
try:
# Add missing link
wid = pdata['workspace']
oroot = ClassInstance.objects.get(pk=ml)
p = Project.objects.get(pk=pid)
link_existing_classification(wid, self.request.user, p, oroot)
unified_tag_groups[eg] = group
num_added_links = num_added_links + 1
except Exception as e:
failed_links[ml] = e
# Show final page
return render_to_response('catmaid/classification/admin_done.html', {
'tag_groups': unified_tag_groups,
'num_added_links': num_added_links,
'failed_links': failed_links,
})
def import_projects(user, pre_projects, make_public, tags, permissions,
tile_width, tile_height, tile_source_type,
cls_graph_ids_to_link):
""" Creates real CATMAID projects out of the PreProject objects
and imports them into CATMAID.
"""
imported = []
not_imported = []
for pp in pre_projects:
try:
# Create stacks and add them to project
stacks = []
for s in pp.stacks:
stack = Stack.objects.create(title=s.name,
dimension=s.dimension,
resolution=s.resolution,
image_base=s.image_base,
num_zoom_levels=s.num_zoom_levels,
file_extension=s.file_extension,
tile_width=tile_width,
tile_height=tile_height,
tile_source_type=tile_source_type,
metadata=s.metadata)
stacks.append(stack)
# Add overlays of this stack
for o in s.overlays:
Overlay.objects.create(title=o.name,
stack=stack,
image_base=o.image_base,
default_opacity=o.default_opacity,
file_extension=o.file_extension,
tile_width=tile_width,
tile_height=tile_height,
tile_source_type=tile_source_type)
# Create new project
p = Project.objects.create(title=pp.name, public=make_public)
# Assign permissions to project
assigned_permissions = []
for user_or_group, perm in permissions:
assigned_perm = assign(perm.codename, user_or_group, p)
assigned_permissions.append(assigned_perm)
# Tag the project
p.tags.add(*tags)
# Add stacks to project
for s in stacks:
trln = Double3D()
ps = ProjectStack.objects.create(project=p,
stack=s,
translation=trln)
# Make project persistent
p.save()
# Link classification graphs
for cg in cls_graph_ids_to_link:
workspace = settings.ONTOLOGY_DUMMY_PROJECT_ID
cgroot = ClassInstance.objects.get(pk=cg)
link_existing_classification(workspace, user, p, cgroot)
# Remember created project
imported.append(pp)
except Exception as e:
not_imported.append((pp, e))
return (imported, not_imported)
def import_projects( user, pre_projects, tags, permissions,
tile_width, tile_height, tile_source_type, cls_graph_ids_to_link ):
""" Creates real CATMAID projects out of the PreProject objects
and imports them into CATMAID.
"""
imported = []
not_imported = []
for pp in pre_projects:
try:
# Create stacks and add them to project
stacks = []
for s in pp.stacks:
stack = Stack.objects.create(
title=s.name,
dimension=s.dimension,
resolution=s.resolution,
image_base=s.image_base,
num_zoom_levels=s.num_zoom_levels,
file_extension=s.file_extension,
tile_width=tile_width,
tile_height=tile_height,
tile_source_type=tile_source_type,
metadata=s.metadata)
stacks.append( stack )
# Add overlays of this stack
for o in s.overlays:
Overlay.objects.create(
title=o.name,
stack=stack,
image_base=o.image_base,
default_opacity=o.default_opacity,
file_extension=o.file_extension,
tile_width=tile_width,
tile_height=tile_height,
tile_source_type=tile_source_type)
# Create new project
p = Project.objects.create(
title=pp.name)
# Assign permissions to project
assigned_permissions = []
for user_or_group, perm in permissions:
assigned_perm = assign( perm.codename, user_or_group, p )
assigned_permissions.append( assigned_perm )
# Tag the project
p.tags.add( *tags )
# Add stacks to project
for s in stacks:
trln = Double3D()
ps = ProjectStack.objects.create(
project=p, stack=s, translation=trln)
# Make project persistent
p.save()
# Link classification graphs
for cg in cls_graph_ids_to_link:
workspace = settings.ONTOLOGY_DUMMY_PROJECT_ID
cgroot = ClassInstance.objects.get(pk=cg)
link_existing_classification(workspace, user, p, cgroot)
# Remember created project
imported.append( pp )
except Exception as e:
not_imported.append( (pp, e) )
return (imported, not_imported)
