def export_jsongraph(request: HttpRequest, project_id) -> JsonResponse:
p = get_object_or_404(Project, pk=project_id)
skeletonlist = request.POST.getlist('skeleton_list[]')
confidence_threshold = int(request.POST.get('confidence_threshold', 0))
bandwidth = int(request.POST.get('bandwidth', 0))
cable_spread = float(request.POST.get('cable_spread',
2500)) # in nanometers
path_confluence = int(request.POST.get('path_confluence', 10)) # a count
compute_risk = 1 == int(request.POST.get('risk', 0))
order = int(request.POST.get('order', 0))
skeletonlist = map(int, skeletonlist)
if not skeletonlist:
raise ValueError("No skeleton IDs provided")
if order > 2: # only allow to retrieve order two to limit server usage
order = 0
while order != 0:
skeleton_info = _skeleton_info_raw(project_id, request.user.id,
skeletonlist, 'OR')[0:2]
incoming, outgoing = skeleton_info['incoming'], skeleton_info[
'outgoing']
skeletonlist = set(skeletonlist).union(set(incoming.keys())).union(
set(outgoing.keys()))
order -= 1
circuit = _skeleton_graph(project_id, skeletonlist, confidence_threshold,
bandwidth, set(), compute_risk, cable_spread,
path_confluence)
newgraph = nx.DiGraph()
for digraph, props in circuit.nodes_iter(data=True):
newgraph.add_node(
props['id'], {
'node_count': props['node_count'],
'skeleton_id': props['skeleton_id'],
'label': props['label'],
'node_reviewed_count': props['node_reviewed_count']
})
for g1, g2, props in circuit.edges_iter(data=True):
id1 = circuit.node[g1]['id']
id2 = circuit.node[g2]['id']
newgraph.add_edge(
id1,
id2,
{
'id': '%s-%s' % (id1, id2),
'weight': props['c'],
'label': str(props['c']) if props['directed'] else None,
'directed': props['directed'],
},
)
return JsonResponse(json_graph.node_link_data(newgraph),
safe=False,
json_dumps_params={'indent': 2})
def export_jsongraph(request, project_id):
p = get_object_or_404(Project, pk=project_id)
skeletonlist = request.POST.getlist('skeleton_list[]')
confidence_threshold = int(request.POST.get('confidence_threshold', 0))
bandwidth = int(request.POST.get('bandwidth', 0))
cable_spread = float(request.POST.get('cable_spread',
2500)) # in nanometers
path_confluence = int(request.POST.get('path_confluence', 10)) # a count
compute_risk = 1 == int(request.POST.get('risk', 0))
synaptic_count_high_pass = int(
request.POST.get('synaptic_count_high_pass', 0))
order = int(request.POST.get('order', 0))
skeletonlist = map(int, skeletonlist)
if order > 2: # only allow to retrieve order two to limit server usage
order = 0
while order != 0:
incoming, outgoing = _skeleton_info_raw(project_id, skeletonlist,
synaptic_count_high_pass,
'logic-OR')
skeletonlist = set(skeletonlist).union(set(incoming.keys())).union(
set(outgoing.keys()))
order -= 1
circuit = _skeleton_graph(project_id, skeletonlist, confidence_threshold,
bandwidth, set(), compute_risk, cable_spread,
path_confluence)
newgraph = nx.DiGraph()
for digraph, props in circuit.nodes_iter(data=True):
newgraph.add_node(
props['id'], {
'node_count': props['node_count'],
'skeleton_id': props['skeleton_id'],
'label': props['label'],
'node_reviewed_count': props['node_reviewed_count']
})
for g1, g2, props in circuit.edges_iter(data=True):
id1 = circuit.node[g1]['id']
id2 = circuit.node[g2]['id']
newgraph.add_edge(
id1, id2, {
'id': '%s-%s' % (id1, id2),
'weight': props['c'],
'label': str(props['c']) if props['directed'] else None,
'directed': props['directed']
})
return HttpResponse(json.dumps(json_graph.node_link_data(newgraph),
indent=2),
mimetype='text/json')
def export_jsongraph(request, project_id):
p = get_object_or_404(Project, pk=project_id)
skeletonlist = request.POST.getlist('skeleton_list[]')
confidence_threshold = int(request.POST.get('confidence_threshold', 0))
bandwidth = int(request.POST.get('bandwidth', 0))
cable_spread = float(request.POST.get('cable_spread', 2500)) # in nanometers
path_confluence = int(request.POST.get('path_confluence', 10)) # a count
compute_risk = 1 == int(request.POST.get('risk', 0))
order = int(request.POST.get('order', 0))
skeletonlist = map(int, skeletonlist)
if not skeletonlist:
raise ValueError("No skeleton IDs provided")
if order > 2: # only allow to retrieve order two to limit server usage
order = 0
while order != 0:
incoming, outgoing = _skeleton_info_raw( project_id, request.user.id, skeletonlist, 'OR' )[0:2]
skeletonlist = set( skeletonlist ).union( set(incoming.keys()) ).union( set(outgoing.keys()) )
order -= 1
circuit = _skeleton_graph(project_id, skeletonlist, confidence_threshold, bandwidth, set(), compute_risk, cable_spread, path_confluence)
newgraph = nx.DiGraph()
for digraph, props in circuit.nodes_iter(data=True):
newgraph.add_node( props['id'], {
'node_count': props['node_count'],
'skeleton_id': props['skeleton_id'],
'label': props['label'],
'node_reviewed_count': props['node_reviewed_count'] })
for g1, g2, props in circuit.edges_iter(data=True):
id1 = circuit.node[g1]['id']
id2 = circuit.node[g2]['id']
newgraph.add_edge( id1, id2, {
'id': '%s-%s' % (id1, id2),
'weight': props['c'],
'label': str(props['c']) if props['directed'] else None,
'directed': props['directed'] })
return HttpResponse(json.dumps(json_graph.node_link_data(newgraph), indent=2), content_type='application/json')