def test_annotation_creation(self):
self.fake_authentication()
neuron_ids = [2365, 2381]
# Expect entity 2365 and 2381 to be not annotated
for nid in neuron_ids:
aq = create_annotation_query(self.test_project_id, {'neuron_id': nid})
self.assertEqual(len(aq), 0)
# Annotate both with the same annotation
_annotate_entities(self.test_project_id, neuron_ids,
{'myannotation': {'user_id': self.test_user_id}})
# Expect entity 2365 and 2381 to be annotated
for nid in neuron_ids:
aq = create_annotation_query(self.test_project_id, {'neuron_id': nid})
self.assertEqual(len(aq), 1)
self.assertEqual(aq[0].name, 'myannotation')
# Annotate both with the pattern annotation
_annotate_entities(self.test_project_id, neuron_ids,
{'pattern {n9} test-{n}-annotation': { 'user_id': self.test_user_id}})
# Expect entity 2365 and 2381 to be annotated
aq = create_annotation_query(self.test_project_id, {'neuron_id': 2365}).order_by('name')
self.assertEqual(len(aq), 2)
self.assertEqual(aq[0].name, 'myannotation')
self.assertEqual(aq[1].name, 'pattern 9 test-1-annotation')
aq = create_annotation_query(self.test_project_id, {'neuron_id': 2381}).order_by('name')
self.assertEqual(len(aq), 2)
self.assertEqual(aq[0].name, 'myannotation')
self.assertEqual(aq[1].name, 'pattern 10 test-2-annotation')
def test_annotation_creation(self):
self.fake_authentication()
neuron_ids = [2365, 2381]
# Expect entity 2365 and 2381 to be not annotated
for nid in neuron_ids:
aq = create_annotation_query(self.test_project_id, {'neuron_id': nid})
self.assertEqual(len(aq), 0)
# Annotate both with the same annotation
_annotate_entities(self.test_project_id, neuron_ids,
{'myannotation': self.test_user_id})
# Expect entity 2365 and 2381 to be annotated
for nid in neuron_ids:
aq = create_annotation_query(self.test_project_id, {'neuron_id': nid})
self.assertEqual(len(aq), 1)
self.assertEqual(aq[0].name, 'myannotation')
# Annotate both with the pattern annotation
_annotate_entities(self.test_project_id, neuron_ids,
{'pattern {n9} test-{n}-annotation': self.test_user_id})
# Expect entity 2365 and 2381 to be annotated
aq = create_annotation_query(self.test_project_id, {'neuron_id': 2365}).order_by('name')
self.assertEqual(len(aq), 2)
self.assertEqual(aq[0].name, 'myannotation')
self.assertEqual(aq[1].name, 'pattern 9 test-1-annotation')
aq = create_annotation_query(self.test_project_id, {'neuron_id': 2381}).order_by('name')
self.assertEqual(len(aq), 2)
self.assertEqual(aq[0].name, 'myannotation')
self.assertEqual(aq[1].name, 'pattern 10 test-2-annotation')
def check_annotations_on_split(project_id, skeleton_id, over_annotation_set,
under_annotation_set):
""" With respect to annotations, a split is only correct if one part keeps
the whole set of annotations.
"""
# Get current annotation set
annotation_query = create_annotation_query(project_id,
{'skeleton_id': skeleton_id})
# Check if current set is equal to under or over set
current_annotation_set = frozenset(a.name for a in annotation_query)
if not current_annotation_set.difference(over_annotation_set):
return True
if not current_annotation_set.difference(under_annotation_set):
return True
return False