def __init__(self, parent, browser, image_container, region_names):
Module.__init__(self, parent, browser)
self._imagecontainer = image_container
self._image_dict = {}
self._display_images = {}
self._rgb_images = {}
palettes = self.import_palettes()
self.object_region_changed.connect(browser.on_object_region_changed)
layout = QBoxLayout(QBoxLayout.TopToBottom, self)
layout.setContentsMargins(5, 5, 5, 5)
frame_channels = QGroupBox('Channels', self)
layout_channels = QBoxLayout(QBoxLayout.TopToBottom, frame_channels)
layout_channels.setContentsMargins(10, 12, 7, 10)
frame_enhance = QGroupBox('Image Enhancement', self)
layout_enhance = QBoxLayout(QBoxLayout.TopToBottom, frame_enhance)
layout_enhance.setContentsMargins(5, 10, 5, 5)
frame_objects = QGroupBox('Objects', self)
layout_objects = QBoxLayout(QBoxLayout.TopToBottom, frame_objects)
layout_objects.setContentsMargins(5, 10, 5, 5)
frame_display = QGroupBox('Display', self)
layout_display = QBoxLayout(QBoxLayout.TopToBottom, frame_display)
layout_display.setContentsMargins(5, 10, 5, 5)
layout.addSpacing(15)
layout.addWidget(frame_channels)
layout.addSpacing(7)
layout.addWidget(frame_enhance)
layout.addSpacing(7)
layout.addWidget(frame_display)
layout.addSpacing(7)
layout.addWidget(frame_objects)
layout.addStretch(1)
self._channels = OrderedDict()
channel_names = sorted(self._imagecontainer.channels)
for idx, channel_name in enumerate(channel_names):
widget = ChannelItem(channel_name, idx, palettes, self)
layout_channels.addWidget(widget)
self._channels[channel_name] = widget
widget.channel_changed.connect(self.on_channel_changed)
self._enhancement = EnhancementFrame(channel_names, frame_enhance)
self._enhancement.values_changed.connect(self.on_display_changed)
layout_enhance.addWidget(self._enhancement)
display = ObjectsFrame(browser, region_names, frame_objects)
self.browser.update_regions.connect(display.update_regionbox)
display.object_region_changed.connect(self.on_object_region_changed)
layout_objects.addWidget(display)
display = DisplayFrame(browser, frame_display)
layout_display.addWidget(display)
def __init__(self, parent, browser, image_container, region_names):
Module.__init__(self, parent, browser)
self._imagecontainer = image_container
self._image_dict = {}
self._display_images = {}
self._rgb_images = {}
palettes = self.import_palettes()
self.object_region_changed.connect(browser.on_object_region_changed)
layout = QBoxLayout(QBoxLayout.TopToBottom, self)
layout.setContentsMargins(5, 5, 5, 5)
frame_channels = QGroupBox("Channels", self)
layout_channels = QBoxLayout(QBoxLayout.TopToBottom, frame_channels)
layout_channels.setContentsMargins(10, 12, 7, 10)
frame_enhance = QGroupBox("Image Enhancement", self)
layout_enhance = QBoxLayout(QBoxLayout.TopToBottom, frame_enhance)
layout_enhance.setContentsMargins(5, 10, 5, 5)
frame_objects = QGroupBox("Objects", self)
layout_objects = QBoxLayout(QBoxLayout.TopToBottom, frame_objects)
layout_objects.setContentsMargins(5, 10, 5, 5)
frame_display = QGroupBox("Display", self)
layout_display = QBoxLayout(QBoxLayout.TopToBottom, frame_display)
layout_display.setContentsMargins(5, 10, 5, 5)
layout.addSpacing(15)
layout.addWidget(frame_channels)
layout.addSpacing(7)
layout.addWidget(frame_enhance)
layout.addSpacing(7)
layout.addWidget(frame_display)
layout.addSpacing(7)
layout.addWidget(frame_objects)
layout.addStretch(1)
self._channels = OrderedDict()
channel_names = sorted(self._imagecontainer.channels)
for idx, channel_name in enumerate(channel_names):
widget = ChannelItem(channel_name, idx, palettes, self)
layout_channels.addWidget(widget)
self._channels[channel_name] = widget
widget.channel_changed.connect(self.on_channel_changed)
self._enhancement = EnhancementFrame(channel_names, frame_enhance)
self._enhancement.values_changed.connect(self.on_display_changed)
layout_enhance.addWidget(self._enhancement)
display = ObjectsFrame(browser, region_names, frame_objects)
self.browser.update_regions.connect(display.update_regionbox)
display.object_region_changed.connect(self.on_object_region_changed)
layout_objects.addWidget(display)
display = DisplayFrame(browser, frame_display)
layout_display.addWidget(display)
def __init__(self, parent, browser, imagecontainer):
Module.__init__(self, parent, browser)
self._imagecontainer = imagecontainer
frame_info = QGroupBox('Plate Information', self)
layout = QGridLayout(frame_info)
# frame_info.setStyleSheet('QLabel { font-size: 10px }')
self._label_info = QLabel(frame_info)
layout.addWidget(self._label_info, 0, 0, 0, 0,
Qt.AlignCenter | Qt.AlignHCenter)
splitter = QSplitter(Qt.Vertical, self)
splitter.setMinimumWidth(40)
layout = QBoxLayout(QBoxLayout.TopToBottom, self)
layout.setContentsMargins(5, 5, 5, 5)
layout.addWidget(splitter)
grp1 = QGroupBox('Plates', splitter)
grp2 = QGroupBox('Positions', splitter)
splitter.addWidget(grp1)
splitter.addWidget(grp2)
layout = QGridLayout(grp1)
layout.setContentsMargins(5, 10, 5, 5)
table = QTableWidget(grp1)
table.setEditTriggers(QTableWidget.NoEditTriggers)
table.setSelectionMode(QTableWidget.SingleSelection)
table.setSelectionBehavior(QTableWidget.SelectRows)
table.setAlternatingRowColors(True)
# table.setStyleSheet('font-size: 10px;')
table.currentItemChanged.connect(self._on_plate_changed)
self._table_plate = table
layout.addWidget(table, 0, 0)
self._update_plate_table()
layout = QGridLayout(grp2)
layout.setContentsMargins(5, 10, 5, 5)
table = QTableWidget(grp2)
table.setEditTriggers(QTableWidget.NoEditTriggers)
table.setSelectionMode(QTableWidget.SingleSelection)
table.setSelectionBehavior(QTableWidget.SelectRows)
table.setAlternatingRowColors(True)
# table.setStyleSheet('font-size: 10px;')
table.currentItemChanged.connect(self._on_position_changed)
self._table_position = table
layout.addWidget(table, 0, 0)
if self._imagecontainer.has_timelapse:
grp3 = QGroupBox('Time', splitter)
splitter.addWidget(grp3)
layout = QGridLayout(grp3)
layout.setContentsMargins(5, 10, 5, 5)
table = QTableWidget(grp3)
table.setEditTriggers(QTableWidget.NoEditTriggers)
table.setSelectionMode(QTableWidget.SingleSelection)
table.setSelectionBehavior(QTableWidget.SelectRows)
table.setAlternatingRowColors(True)
# table.setStyleSheet('font-size: 10px;')
table.currentItemChanged.connect(self._on_time_changed)
self._table_time = table
layout.addWidget(table, 0, 0)
splitter.addWidget(frame_info)
def __init__(self, parent, browser, settings, imagecontainer):
Module.__init__(self, parent, browser)
self._current_class = None
self._detect_objects = False
self._current_scene_items = set()
self._settings = settings
self._imagecontainer = imagecontainer
self._annotations = Annotations()
self._object_items = {}
splitter = QSplitter(Qt.Vertical, self)
grp_box = QGroupBox('Classes', splitter)
layout = QBoxLayout(QBoxLayout.TopToBottom, grp_box)
layout.setContentsMargins(5, 10, 5, 5)
class_table = QTableWidget(grp_box)
class_table.setEditTriggers(QTableWidget.NoEditTriggers)
class_table.setSelectionMode(QTableWidget.SingleSelection)
class_table.setSelectionBehavior(QTableWidget.SelectRows)
#class_table.setSortingEnabled(True)
class_table.setColumnCount(4)
class_table.setHorizontalHeaderLabels(['Name', 'Label', 'Color',
'Samples',
])
class_table.resizeColumnsToContents()
class_table.currentItemChanged.connect(self._on_class_changed)
class_table.setStyleSheet('font-size: 10px;')
layout.addWidget(class_table)
self._class_table = class_table
frame2 = QFrame(grp_box)
layout2 = QBoxLayout(QBoxLayout.LeftToRight, frame2)
layout2.setContentsMargins(0,0,0,0)
self._import_class_definitions_btn = QPushButton('Import class definitions')
layout2.addWidget(self._import_class_definitions_btn)
self._import_class_definitions_btn.clicked.connect(self._on_import_class_definitions)
layout.addWidget(frame2)
frame2 = QFrame(grp_box)
layout2 = QBoxLayout(QBoxLayout.LeftToRight, frame2)
layout2.setContentsMargins(0,0,0,0)
self._class_sbox = QSpinBox(frame2)
self._class_color_btn = ColorButton(None, frame2)
self._class_sbox.setRange(0, 1000)
self._class_text = QLineEdit(frame2)
layout2.addWidget(self._class_color_btn)
layout2.addWidget(self._class_sbox)
layout2.addWidget(self._class_text)
layout.addWidget(frame2)
frame2 = QFrame(grp_box)
layout2 = QBoxLayout(QBoxLayout.LeftToRight, frame2)
layout2.setContentsMargins(0,0,0,0)
btn = QPushButton('Apply', frame2)
btn.clicked.connect(self._on_class_apply)
layout2.addWidget(btn)
btn = QPushButton('Add', frame2)
btn.clicked.connect(self._on_class_add)
layout2.addWidget(btn)
btn = QPushButton('Remove', frame2)
btn.clicked.connect(self._on_class_remove)
layout2.addWidget(btn)
layout.addWidget(frame2)
splitter.addWidget(grp_box)
grp_box = QGroupBox('Annotations', splitter)
layout = QBoxLayout(QBoxLayout.TopToBottom, grp_box)
layout.setContentsMargins(5, 10, 5, 5)
ann_table = QTableWidget(grp_box)
ann_table.setEditTriggers(QTableWidget.NoEditTriggers)
ann_table.setSelectionMode(QTableWidget.SingleSelection)
ann_table.setSelectionBehavior(QTableWidget.SelectRows)
#ann_table.setSortingEnabled(True)
column_names = ['Position', 'Frame', 'Samples']
if self._imagecontainer.has_multiple_plates:
column_names = ['Plate'] + column_names
ann_table.setColumnCount(len(column_names))
ann_table.setHorizontalHeaderLabels(column_names)
ann_table.resizeColumnsToContents()
ann_table.currentItemChanged.connect(self._on_anntable_changed)
ann_table.setStyleSheet('font-size: 10px;')
layout.addWidget(ann_table)
self._ann_table = ann_table
splitter.addWidget(grp_box)
frame = QFrame(grp_box)
layout_frame = QBoxLayout(QBoxLayout.LeftToRight, frame)
layout_frame.setContentsMargins(0, 0, 0, 0)
btn = QPushButton('New', frame)
btn.clicked.connect(self._on_new_classifier)
layout_frame.addWidget(btn)
#layout_frame.addSpacing(5)
btn = QPushButton('Open', frame)
btn.clicked.connect(self._on_open_classifier)
layout_frame.addWidget(btn)
btn = QPushButton('Save', frame)
btn.clicked.connect(self._on_save_classifier)
layout_frame.addWidget(btn)
#layout_frame.addSpacing(5)
btn = QPushButton('Save as', frame)
btn.pressed.connect(self._on_saveas_classifier)
layout_frame.addWidget(btn)
layout.addWidget(frame)
layout = QBoxLayout(QBoxLayout.TopToBottom, self)
layout.setContentsMargins(5, 5, 5, 5)
layout.addWidget(splitter)
self._learner = self._init_new_classifier()
self._action_grp = QActionGroup(browser)
class_fct = lambda id: lambda : self._on_shortcut_class_selected(id)
for x in range(1,11):
action = browser.create_action(
'Select Class Label %d' % x,
shortcut=QKeySequence(str(x) if x < 10 else '0'),
slot=class_fct(x))
self._action_grp.addAction(action)
browser.addAction(action)
browser.coordinates_changed.connect(self._on_coordinates_changed)
browser.show_objects_toggled.connect(self._on_show_objects)
browser.show_contours_toggled.connect(self._on_show_contours_toggled)
def __init__(self, parent, browser, imagecontainer):
Module.__init__(self, parent, browser)
self._imagecontainer = imagecontainer
frame_info = QGroupBox('Plate Information', self)
layout = QGridLayout(frame_info)
frame_info.setStyleSheet('QLabel { font-size: 10px }')
self._label_info = QLabel(frame_info)
layout.addWidget(self._label_info, 0, 0, 0, 0,
Qt.AlignCenter | Qt.AlignHCenter)
splitter = QSplitter(Qt.Vertical, self)
splitter.setMinimumWidth(40)
layout = QBoxLayout(QBoxLayout.TopToBottom, self)
layout.setContentsMargins(5, 5, 5, 5)
layout.addWidget(splitter)
grp1 = QGroupBox('Plates', splitter)
grp2 = QGroupBox('Positions', splitter)
splitter.addWidget(grp1)
splitter.addWidget(grp2)
layout = QGridLayout(grp1)
layout.setContentsMargins(5, 10, 5, 5)
table = QTableWidget(grp1)
table.setEditTriggers(QTableWidget.NoEditTriggers)
table.setSelectionMode(QTableWidget.SingleSelection)
table.setSelectionBehavior(QTableWidget.SelectRows)
table.setAlternatingRowColors(True)
table.setStyleSheet('font-size: 10px;')
table.currentItemChanged.connect(self._on_plate_changed)
self._table_plate = table
layout.addWidget(table, 0, 0)
self._update_plate_table()
layout = QGridLayout(grp2)
layout.setContentsMargins(5, 10, 5, 5)
table = QTableWidget(grp2)
table.setEditTriggers(QTableWidget.NoEditTriggers)
table.setSelectionMode(QTableWidget.SingleSelection)
table.setSelectionBehavior(QTableWidget.SelectRows)
table.setAlternatingRowColors(True)
table.setStyleSheet('font-size: 10px;')
table.currentItemChanged.connect(self._on_position_changed)
self._table_position = table
layout.addWidget(table, 0, 0)
if self._imagecontainer.has_timelapse:
grp3 = QGroupBox('Time', splitter)
splitter.addWidget(grp3)
layout = QGridLayout(grp3)
layout.setContentsMargins(5, 10, 5, 5)
table = QTableWidget(grp3)
table.setEditTriggers(QTableWidget.NoEditTriggers)
table.setSelectionMode(QTableWidget.SingleSelection)
table.setSelectionBehavior(QTableWidget.SelectRows)
table.setAlternatingRowColors(True)
table.setStyleSheet('font-size: 10px;')
table.currentItemChanged.connect(self._on_time_changed)
self._table_time = table
layout.addWidget(table, 0, 0)
splitter.addWidget(frame_info)