def init(args):
log.set_rank(args.rank)
if args.output_dir is not None:
log.set_directory(args.output_dir)
log.set_level(args.verbosity)
args = validate_args(args)
if args.apex:
from apex import amp
log.info('Configurations:\n' + pformat(args.__dict__))
log.info('world_size = %d, batch_size = %d, device = %s, backend = %s',
args.world_size, args.batch_size, args.device, args.backend)
if not args.cpu:
torch.cuda.set_device(args.local_rank)
torch.backends.cudnn.benchmark = True
if args.deterministic:
torch.manual_seed(args.rank)
np.random.seed(args.rank)
torch.backends.cudnn.deterministic = True
torch.cuda.manual_seed(args.rank)
dist.init_process_group(backend=args.backend)
def save_data(train_res, val_res, fname, output_dir='data'):
if not os.path.isdir(output_dir):
os.makedirs(output_dir)
if output_dir.endswith('/'):
output_dir = output_dir[:-1]
header = 'iterations train_time run_time loss'
if len(train_res[0]) == 5:
header += ' accuracy'
def _save(res, name):
res = np.array(res)
np.savetxt(output_dir + '/full_' + fname + name,
res,
header=header,
comments='')
# Downsample if needed
if len(res) > 500:
idx = np.r_[:50, 50:500:5, 500:len(res):int((len(res)) / 100)]
res = res[idx]
np.savetxt(output_dir + '/' + fname + name,
res,
header=header,
comments='')
_save(train_res, '_train.txt')
_save(val_res, '_val.txt')
log.info('Data saved to %s/[full_]%s_[train/val].txt', output_dir, fname)
def __init__(self, *args, sync_freq=1, fp16_grads=False, **kwargs):
r"""Init function.
Args:
module:
The module to be wrapped.
sync_freq:
Number of steps between communications.
fp16_grads:
Whether to use fp16 gradients.
kwargs:
Other args torch.nn.parallel.DistributedDataParallel requires.
"""
log.info('Using %s', self.__class__.__name__)
# Test PyTorch version
if torch.__version__ < '1.7.0':
log.FATAL(
"Please install PyTorch v1.7.0-rc1 to use DistributedGradientParallel!"
)
if dist.get_backend() != 'nccl':
log.warn('DistributedGradientParallel performs better with NCCL')
super().__init__(*args, **kwargs)
self.sync_freq = sync_freq
self.fp16_grads = fp16_grads
self._iter_counter = 0
if self.fp16_grads:
log.info('Using fp16 gradients')
if dist.get_backend() != 'nccl':
self._register_comm_hook(state=None,
hook=fp16_compress_hook_gloo)
else:
self._register_comm_hook(state=None,
hook=fp16_compress_hook_nccl)
def _forward_pre_hook(*args, **kwargs):
if self.training:
# Update iteration counter
self._iter_counter += 1
self._iter_counter %= self.sync_freq
log.debug('_forward_pre_hook called on %s, _iter_counter %d',
self.device, self._iter_counter)
if self._iter_counter == 0:
self.require_backward_grad_sync = True
else:
self.require_backward_grad_sync = False
self.register_forward_pre_hook(_forward_pre_hook)
def wrap_model(model, args, optimizer=None):
if args.apex:
log.info('Apex wrapping')
from apex import amp
model, optimizer = amp.initialize(
model,
optimizer,
opt_level=args.opt_level,
keep_batchnorm_fp32=args.keep_batchnorm_fp32,
loss_scale=args.loss_scale)
if args.ddp == 'DistributedDataParallel':
model = ceddl.parallel.DistributedDataParallel(model, **args.__dict__)
elif args.ddp == 'SparseDistributedDataParallel':
model = ceddl.parallel.SparseDistributedDataParallel(
model, **args.__dict__)
elif args.ddp == 'NetworkDataParallel':
model = ceddl.parallel.NetworkDataParallel(model, **args.__dict__)
else:
if args.cpu:
device_ids = None
else:
device_ids = [args.rank]
if args.ddp == 'pytorch':
model = torch.nn.parallel.DistributedDataParallel(
model, device_ids=device_ids)
elif args.ddp == 'DistributedGradientParallel':
model = ceddl.parallel.DistributedGradientParallel(
model,
fp16_grads=args.fp16_grads,
sync_freq=args.sync_freq,
device_ids=device_ids)
return model, optimizer
args.batch_size)
model = Net().to(args.device)
args.use_ref_module = True
args.tracking_loader = train_loader
args.criterion = nn.CrossEntropyLoss()
model, optimizer = utils.wrap_model(model, args)
optimizer = ceddl.optim.NetworkSVRG(model, lr=args.lr)
# optimizer = torch.optim.SGD(model.parameters(),
# lr=args.lr,
# weight_decay=args.weight_decay,
# momentum=args.momentum)
log.info('Model is on %s', next(model.parameters()).device)
classes = [int(i) for i in range(10)]
criterion = nn.CrossEntropyLoss()
train_res, val_res = utils.train(model,
criterion,
optimizer,
train_loader,
args,
exp_name='mnist',
val_loader=val_loader,
classes=classes)
log.info('Process %d exited', args.rank)
utils.init(args)
# log.set_allowed_ranks(list(range(args.world_size)))
# Local data
local_n_samples = int(args.n_samples / args.world_size)
X = torch.zeros(local_n_samples, args.dim)
Y = torch.zeros(local_n_samples, 1)
if args.rank == 0:
# Set the random seed so the data is the same in every run
np.random.seed(0)
# Generate random data at node 0,
X_total, Y_total, w_0, loss_0 = generate_data(args.n_samples, args.dim, args.condition_number, args.noise_variance)
log.info('Data generated, the best loss is %.7f' % loss_0)
# then send to all other processes
dist.scatter(X, [_ for _ in X_total.split(local_n_samples)])
dist.scatter(Y, [_ for _ in Y_total.split(local_n_samples)])
else:
dist.scatter(X)
dist.scatter(Y)
dataset = torch.utils.data.TensorDataset(X, Y)
train_loader = torch.utils.data.DataLoader(dataset, batch_size=args.batch_size, shuffle=False)
val_loader = torch.utils.data.DataLoader(dataset, batch_size=local_n_samples, shuffle=False)
def validate(model, val_loader, criterion, classes=None, device=None):
log.info('Validating model')
losses = []
if classes is not None:
confusion_matrix = np.zeros((len(classes), len(classes)))
for data, target in val_loader:
target = target.to(device=device, non_blocking=True)
data = data.to(device=device, non_blocking=True)
output = model(data)
loss = criterion(output, target)
losses.append(loss.cpu().item())
if classes is not None:
_, predicted = torch.max(output, 1)
for i in range(len(target)):
l = target[i]
p = predicted[i]
confusion_matrix[l][p] += 1
loss = np.mean(losses) / dist.get_world_size()
loss = torch.Tensor([loss]).to(device)
dist.all_reduce(loss)
loss = loss.cpu().item()
if classes is not None:
confusion_matrix = torch.from_numpy(confusion_matrix).to(device)
dist.all_reduce(confusion_matrix)
confusion_matrix = confusion_matrix.cpu().numpy()
log.debug('Synchronized from other wokers')
if classes is not None:
acc = np.diag(confusion_matrix).sum() / confusion_matrix.sum()
confusion_matrix /= confusion_matrix.sum(axis=1)
# log.debug(confusion_matrix)
max_len = str(max([len(str(c)) for c in classes]))
if len(classes) > 10:
log.info('Accuracy of first 5 classes')
for i in range(5):
log.info('%-' + max_len + 's: %8.5f%%', classes[i],
100 * confusion_matrix[i, i])
log.info('Accuracy of last 5 classes')
for i in range(len(classes) - 5, len(classes)):
log.info('%-' + max_len + 's: %8.5f%%', classes[i],
100 * confusion_matrix[i, i])
else:
log.info('Accuracy of each class')
for i in range(len(classes)):
log.info('%-' + max_len + 's: %8.5f%%', classes[i],
100 * confusion_matrix[i, i])
log.info('Validation loss %.5f, accuracy %.5f%%', loss, acc * 100)
return loss, acc
else:
log.info('Validation loss %.5f', loss)
return [loss]
def train(model,
criterion,
optimizer,
train_loader,
args,
val_loader=None,
exp_name=None,
classes=None,
scheduler=None):
if args.apex:
from apex import amp
def _val():
if args.val_interval is not None:
val_start = time()
model.eval()
val_res.append([
i, train_time, run_time, *validate(model,
val_loader,
criterion,
classes=classes,
device=args.device)
])
model.train()
val_end = time()
return val_end - val_start
else:
return 0
def _save():
if args.rank == 0:
fname = get_fname(args, exp_name=None)
save_data(train_res, val_res, fname, output_dir=args.output_dir)
log.debug('Data saved to %s', fname)
def _eta():
_time = train_time / i * (total_batches - i)
if args.val_interval is not None:
_time += val_time / (i // args.val_interval + 1) * (
(total_batches - i) // args.val_interval + 1)
h = _time / 3600
if h > 1:
return "%.2fh" % h
m = _time / 60
if m > 1:
return "%.2fm" % m
return "%.2fs" % _time
total_batches = len(train_loader) * args.epochs
train_res = []
val_res = []
running_loss = []
running_acc = []
i = 0
val_time = run_time = train_time = 0
train_start = time()
printed = False
val_time += _val()
log.info('Training started')
model.train()
optimizer.zero_grad()
if args.gradient_accumulation and args.ddp == 'pytorch':
model.require_backward_grad_sync = False
for epoch in range(1, args.epochs + 1):
for _, (data, target) in enumerate(train_loader):
i += 1
target = target.to(device=args.device, non_blocking=True)
data = data.to(device=args.device, non_blocking=True)
if args.ddp == 'pytorch':
if args.gradient_accumulation and i % args.sync_freq != 0:
model.require_backward_grad_sync = False
else:
model.require_backward_grad_sync = True
# ==== Step begin ====
output = model(data)
loss = criterion(output, target)
if args.gradient_accumulation:
loss /= args.sync_freq
if args.apex:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
if args.ddp == 'DistributedGradientParallel' and printed == False:
for n, p in model.named_parameters():
log.warn(
'%s.grad.dtype = %s, max difference between original grad and half precision grad is %f',
n, p.grad.dtype,
(p.grad - p.grad.clone().half()).abs().max())
printed = True
if not args.gradient_accumulation or i % args.sync_freq == 0:
log.debug('[%d/%d, %5d/%d] optimizer step', epoch, args.epochs,
i, total_batches)
optimizer.step()
optimizer.zero_grad()
loss = loss.item()
running_loss.append(loss)
if classes is not None:
acc = accuracy(output, target).item()
running_acc.append(acc)
# ==== Step done ====
current_time = time()
run_time = current_time - train_start
train_time = run_time - val_time
if args.gradient_accumulation:
tmp_res = [i, train_time, run_time, loss * args.sync_freq]
else:
tmp_res = [i, train_time, run_time, loss]
if classes is not None:
tmp_res += [acc]
train_res.append(tmp_res)
if i % args.disp_interval == 0:
log.info(
'[%d/%d, %5d/%d] local running loss %.5f, local running acc %.5f%%, average train time %.4f seconds per batch, eta %s',
epoch, args.epochs, i, total_batches,
np.mean(running_loss),
np.mean(running_acc) * 100, train_time / i, _eta())
running_loss = []
running_acc = []
if args.val_interval is not None and i % args.val_interval == 0:
val_time += _val()
# Update saved data after every validation
_save()
# end for
current_time = time()
run_time = current_time - train_start
train_time = run_time - val_time
log.info(
'Training epoch %d ends, total run time %.4f seconds, average train time %.4f seconds per batch',
epoch, run_time, train_time / i)
if scheduler is not None:
log.debug('schedule.step() called')
scheduler.step()
if args.val_interval is not None and i % args.val_interval != 0:
val_time += _val()
current_time = time()
run_time = current_time - train_start
train_time = run_time - val_time
_save()
if classes is not None:
best_acc = max([x[-1] for x in val_res])
log.info(
'Training finished, %d epochs, final val loss %.5f, final val acc %.5f%%, best val acc %.5f%%',
epoch, val_res[-1][-2], val_res[-1][-1] * 100, best_acc * 100)
else:
log.info('Training finished, %d epochs, final val loss %.5f', epoch,
val_res[-1][-1])
return train_res, val_res
def __init__(self,
module,
world_local_size=None,
node_rank=None,
local_rank=None,
sync_freq=1,
num_streams=1,
premultiplier=None,
**kwargs):
r"""Init function.
Args:
module:
The module to be wrapped.
sync_freq:
Number of steps between communications.
num_streams:
Number of CUDA streams to use for communication.
premultiplier:
The multiplier to be applied before communication. If not none,
parameters will be multiplied by pre-multiplier before
communication, then divided by the pre-multiplier after
communication.
"""
super().__init__()
log.info('Using %s', self.__class__.__name__)
self.module = module
self.device = next(self.module.parameters()).device
# Assume torch.dist is initialized
self.rank = dist.get_rank()
self.world_size = dist.get_world_size()
self.local_rank = local_rank if local_rank is not None else self.rank
self.node_rank = node_rank if node_rank is not None else 0
self.world_local_size = world_local_size if world_local_size is not None else 1
# When the counter equals to sync_freq, perform communication and reset
self.premultiplier = premultiplier
self.sync_freq = sync_freq
self._iter_counter = 0
self.param_info = [{
'numel': param.numel(),
'shape': param.shape
} for param in self.parameters()]
self.flat_parameters, self.flat_indexes = self.flatten_tensors(
list(self.parameters()))
self.assign_unflattened_tensors(self.parameters(),
self.flat_parameters)
log.debug('Broadcasting init params')
for param in self.flat_parameters:
dist.broadcast(param, 0)
log.debug('Broadcasting init params done')
self.num_streams = num_streams
if self.device.type == 'cuda':
self.streams = [
torch.cuda.Stream() for _ in range(self.num_streams)
]
def __init__(self, world_size, **kwargs):
cycle = int(np.log(world_size - 1) / np.log(2))
super().__init__(world_size, cycle=cycle, **kwargs)
log.info('Exponential graph initialized with cycle %d', self.cycle)
def __init__(self, world_size, **kwargs):
super().__init__(world_size, cycle=1, **kwargs)
log.info('Complete graph initialized')
import numpy as np
from .communication_graph import CommunicationGraph
from ceddl import log
class CompleteGraph(CommunicationGraph):
def __init__(self, world_size, **kwargs):
super().__init__(world_size, cycle=1, **kwargs)
log.info('Complete graph initialized')
def update_graph(self):
# Don't update
pass
def generate_adjacency_matrix(self, t):
return np.ones((self.world_size, self.world_size))
if __name__ == '__main__':
a = CompleteGraph(5, n_peers=1)
log.info(str(a.adjacency_matrix))
log.info(a.cycle)
