def get_matplotlib_interpolation_preference():
interpolation = get_interpolation_mode()
if interpolation == IM_NEAREST:
return "nearest"
elif interpolation == IM_BILINEAR:
return "bilinear"
elif interpolation == IM_BICUBIC:
return "bicubic"
return "nearest"
def __init__(self, parent, workspace):
self.frame = WorkspaceViewFigure(
parent,
title="CellProfiler Workspace",
secret_panel_class=wx.lib.scrolledpanel.ScrolledPanel,
help_menu_items=FIGURE_HELP,
)
self.workspace = workspace
self.ignore_redraw = False
self.image_rows = []
self.object_rows = []
self.mask_rows = []
self.measurement_rows = []
self.frame.set_subplots((1, 1))
self.axes = self.frame.subplot(0, 0)
self.axes.invert_yaxis()
interpolation = get_interpolation_mode()
if interpolation == IM_NEAREST:
interpolation = INTERPOLATION_NEAREST
elif interpolation == IM_BILINEAR:
interpolation = INTERPOLATION_BILINEAR
else:
interpolation = INTERPOLATION_BICUBIC
self.image = CPImageArtist(interpolation=interpolation)
assert isinstance(self.axes, matplotlib.axes.Axes)
self.axes.add_artist(self.image)
self.axes.set_aspect("equal")
self.__axes_scale = None
panel = self.frame.secret_panel
panel.Sizer = wx.BoxSizer(wx.VERTICAL)
self.panel = panel
#
# Make a grid of image controls
#
panel.Sizer.AddSpacer(4)
self.image_grid = wx.GridBagSizer(vgap=3, hgap=3)
sub_sizer = wx.BoxSizer(wx.VERTICAL)
panel.Sizer.Add(sub_sizer, 0, wx.ALIGN_LEFT | wx.LEFT | wx.RIGHT, 3)
sub_sizer.Add(self.image_grid, 0, wx.ALIGN_LEFT)
self.image_grid.Add(
wx.StaticText(panel, label="Images"),
(0, C_CHOOSER),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.image_grid.Add(
wx.StaticText(panel, label="Color"),
(0, C_COLOR),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.image_grid.Add(
wx.StaticText(panel, label="Show"),
(0, C_SHOW),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.image_grid.Add(
wx.StaticText(panel, label="Remove"),
(0, C_REMOVE),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.add_image_row(can_delete=False)
add_image_button = wx.Button(panel, label="Add Image")
sub_sizer.Add(add_image_button, 0, wx.ALIGN_RIGHT)
add_image_button.Bind(wx.EVT_BUTTON,
lambda event: self.add_image_row())
panel.Sizer.AddSpacer(4)
panel.Sizer.Add(wx.StaticLine(panel, style=wx.LI_HORIZONTAL), 0,
wx.EXPAND)
panel.Sizer.AddSpacer(4)
#
# Make a grid of object controls
#
self.object_grid = wx.GridBagSizer(vgap=3, hgap=3)
sub_sizer = wx.BoxSizer(wx.VERTICAL)
panel.Sizer.Add(sub_sizer, 0, wx.ALIGN_LEFT | wx.LEFT | wx.RIGHT, 3)
sub_sizer.Add(self.object_grid, 0, wx.ALIGN_LEFT)
self.object_grid.Add(
wx.StaticText(panel, label="Objects"),
(0, C_CHOOSER),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.object_grid.Add(
wx.StaticText(panel, label="Color"),
(0, C_COLOR),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.object_grid.Add(
wx.StaticText(panel, label="Show"),
(0, C_SHOW),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.object_grid.Add(
wx.StaticText(panel, label="Remove"),
(0, C_REMOVE),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.add_objects_row(can_delete=False)
add_object_button = wx.Button(panel, label="Add Objects")
sub_sizer.Add(add_object_button, 0, wx.ALIGN_RIGHT)
add_object_button.Bind(wx.EVT_BUTTON,
lambda event: self.add_objects_row())
panel.Sizer.AddSpacer(4)
panel.Sizer.Add(wx.StaticLine(panel, style=wx.LI_HORIZONTAL), 0,
wx.EXPAND)
panel.Sizer.AddSpacer(4)
#
# Make a grid of mask controls
#
self.mask_grid = wx.GridBagSizer(vgap=3, hgap=3)
sub_sizer = wx.BoxSizer(wx.VERTICAL)
panel.Sizer.Add(sub_sizer, 0, wx.ALIGN_LEFT | wx.LEFT | wx.RIGHT, 3)
sub_sizer.Add(self.mask_grid, 0, wx.ALIGN_LEFT)
self.mask_grid.Add(
wx.StaticText(panel, label="Masks"),
(0, C_CHOOSER),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.mask_grid.Add(
wx.StaticText(panel, label="Color"),
(0, C_COLOR),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.mask_grid.Add(
wx.StaticText(panel, label="Show"),
(0, C_SHOW),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.mask_grid.Add(
wx.StaticText(panel, label="Remove"),
(0, C_REMOVE),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.add_mask_row(can_delete=False)
add_mask_button = wx.Button(panel, label="Add Mask")
sub_sizer.Add(add_mask_button, 0, wx.ALIGN_RIGHT)
add_mask_button.Bind(wx.EVT_BUTTON, lambda event: self.add_mask_row())
panel.Sizer.AddSpacer(4)
panel.Sizer.Add(wx.StaticLine(panel, style=wx.LI_HORIZONTAL), 0,
wx.EXPAND)
panel.Sizer.AddSpacer(4)
#
# Make a grid of measurements to display
#
self.m_grid = wx.GridBagSizer(vgap=3, hgap=3)
sub_sizer = wx.BoxSizer(wx.VERTICAL)
panel.Sizer.Add(sub_sizer, 0, wx.ALIGN_LEFT | wx.LEFT | wx.RIGHT, 3)
sub_sizer.Add(self.m_grid, 0, wx.ALIGN_LEFT)
self.m_grid.Add(
wx.StaticText(panel, label="Measurement"),
(0, C_CHOOSER),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.m_grid.Add(
wx.StaticText(panel, label="Font"),
(0, C_COLOR),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.m_grid.Add(
wx.StaticText(panel, label="Show"),
(0, C_SHOW),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.m_grid.Add(
wx.StaticText(panel, label="Remove"),
(0, C_REMOVE),
flag=wx.ALIGN_CENTER_HORIZONTAL | wx.ALIGN_BOTTOM,
)
self.add_measurement_row(can_delete=False)
add_measurement_button = wx.Button(panel, label="Add Measurement")
sub_sizer.Add(add_measurement_button, 0, wx.ALIGN_RIGHT)
add_measurement_button.Bind(wx.EVT_BUTTON, self.on_add_measurement_row)
panel.Sizer.AddSpacer(6)
help_button = wx.Button(panel, wx.ID_HELP)
panel.Sizer.Add(help_button, 0, wx.ALIGN_RIGHT)
def on_help(event):
HTMLDialog(
panel,
"Workspace viewer help",
rst_to_html_fragment(WORKSPACE_VIEWER_HELP),
).Show()
help_button.Bind(wx.EVT_BUTTON, on_help)
self.image.add_to_menu(self.frame, self.frame.menu_subplots)
self.frame.Bind(wx.EVT_CONTEXT_MENU, self.on_context_menu)
self.frame.Bind(wx.EVT_CLOSE, self.on_frame_close)
self.set_workspace(workspace)
self.frame.secret_panel.Show()
w, h = self.frame.GetSize()
w += self.frame.secret_panel.GetMinWidth()
self.frame.SetSize(wx.Size(w, h))