def get_delivery_report_from_hk(hk_api: HousekeeperAPI, case_id: str) -> str:
delivery_report_tag_name = "delivery-report"
version_obj = hk_api.last_version(case_id)
uploaded_delivery_report_files = hk_api.get_files(
bundle=case_id,
tags=[delivery_report_tag_name],
version=version_obj.id,
)
if uploaded_delivery_report_files.count() == 0:
raise FileNotFoundError(f"No delivery report was found in housekeeper for {case_id}")
return uploaded_delivery_report_files[0].full_path
def _get_multiqc_latest_file(hk_api: HousekeeperAPI, case_name: str) -> str:
"""Get latest multiqc_data.json path for a case_name
Args:
case_name(str): onemite
Returns:
multiqc_data_path(str): /path/to/multiqc.json
"""
version_obj = hk_api.last_version(case_name)
multiqc_json_file = hk_api.get_files(
bundle=case_name, tags=["multiqc-json"], version=version_obj.id
)
if len(list(multiqc_json_file)) == 0:
raise FileNotFoundError(f"No multiqc.json was found in housekeeper for {case_name}")
return multiqc_json_file[0].full_path