def initialize_one_shot(dummy):
""" Initialize the one shot calculation"""
p = read_inputs() # read all the inputs
os.system("cp ../cilib/" + str(p.n) + "/* ./") # copy input files
# os.system("cp "+ str(p.n) + "/* ./") # copy input files
at = CIatom() # create the CI object
at.read() # read all the matrices
at.get_basis() # read the basis from file
m = DE(at, D=p.D, E=p.E, soc=p.soc, U=p.U, O=p.O, z4=p.z4,
b=p.b) # get the hamiltonian
if do_check: check_all(at) # check the hamiltonian
header = latex_DE(at,
D=p.D,
E=p.E,
soc=p.soc,
U=p.U,
O=p.O,
z4=p.z4,
n=p.n,
b=p.b) # string for the hamiltonian
ls = lowest_states(m) # create the object
ls.disentangle_manifolds(at.jz)
write.write_all(at, ls, header=header)
os.system("pdflatex spectrum_ci.tex")
os.system("cp spectrum_ci.pdf ../") # copy to the previous folder
def check_pwd(strs, passlist):
ck_result = check.check_all(strs)
if ck_result:
passlist.write(strs + "\n")
else:
# print "Weak password!"
pass
print >> output, "unknown key '%s' in output" % (key)
ok = False
if ok:
for key in a_order:
if key in b_lookup:
v1, v2 = a_lookup[key], b_lookup[key]
print "%s: reference:%s yours:%s difference: %lf" % (
key, v1, v2, float(v2) - float(v1))
else:
print >> output, "key '%s' is missing from output" % (key)
ok = False
return ok
checks = {
"ppattach_prep": {
'stdout': diff_report_scores
},
"ppattach_all": {
'stdout': diff_report_scores
},
"ppattach_curve": {
'file_check': ["ppattach_curve.png", os.path.exists]
},
"rechunk": {
'stdout': diff_report_scores
},
}
check.check_all(checks, extra_usage=__doc__.rstrip('\n\r'))
def make_file_check_llvm_err(**args):
gold_path, output_path = gold_output_paths(".llvm.ret", **args)
diff_exit_status = make_diff_exit_status("Testcase was expected to succeed but failed.", "Testcase was expected to fail but succeeded.")
return { 'gold': gold_path, 'output': output_path, 'check': diff_exit_status, 'load_lines': True, 'backup': False, 'gold_default': ['0'], 'name': "code generation exit status" }
def make_file_check_run_out(**args):
gold_path, output_path = gold_output_paths(".run.out", **args)
return { 'gold': gold_path, 'output': output_path, 'check': diff_exact, 'load_lines': True, 'backup': False, 'gold_default': [], 'name': "final output from compiled program" }
checks = {
"q0": {},
"q0-hw3": {},
"q1": {},
"q2": {},
"q3": {},
"q4": {},
"q5": {},
"q6-success": {},
"q6-failure": {},
}
check_defaults = {
'command': command,
'source_files': [codegen],
'stdout': None,
'stderr': None,
'file_checks': [make_file_check_llvm_err, make_file_check_run_out]
}
check.check_all(checks, check_defaults, extra_usage=__doc__.rstrip('\n\r') % (source_extension))
for j in ewords:
output.write("---")
output.write("\n")
for k in range(max(map(len, ewords))):
output.write(" ")
for word in ewords:
letter = word[k] if len(word) > k else " "
output.write(" %s " % letter)
output.write("\n")
output.write("\n")
precision = size_a_and_p / size_a
recall = size_a_and_s / size_s
aer = 1 - ((size_a_and_s + size_a_and_p) / (size_a + size_s))
output.write("Precision = %f\nRecall = %f\nAER = %f\n" %
(precision, recall, aer))
print >> sys.stderr, "Precision = %f\nRecall = %f\nAER = %f\n" % (
precision, recall, aer)
return True
checks = {
"align": {
'stdout': grade_align
},
}
check.check_all(checks,
extra_ops=('p:n:', align_ops),
extra_usage=__doc__.rstrip('\n\r'))
try:
a_order, a_lookup = parse(a, "reference", None)
b_order, b_lookup = parse(b, "output", a_order)
except ValueError, e:
return False
ok = True
for key in b_order:
if key not in a_lookup:
print >> output, "unknown key '%s' in output" % (key)
ok = False
if ok:
for key in a_order:
if key in b_lookup:
v1, v2 = a_lookup[key], b_lookup[key]
print "%s: reference:%s yours:%s difference: %lf" % (key, v1, v2, float(v2)-float(v1))
else:
print >> output, "key '%s' is missing from output" % (key)
ok = False
return ok
checks = {
"ppattach_prep": { 'stdout': diff_report_scores },
"ppattach_all": { 'stdout': diff_report_scores },
"ppattach_curve": { 'file_check': ["ppattach_curve.png", os.path.exists] },
"rechunk": { 'stdout': diff_report_scores },
}
check.check_all(checks, extra_usage=__doc__.rstrip('\n\r'))
for (j, _) in enumerate(ewords):
(left,right) = ("(",")") if (i,j) in alignment else (" "," ")
point = "*" if (i,j) in sure else "?" if (i,j) in possible else " "
output.write("%s%s%s" % (left,point,right))
output.write(" | %s\n" % f_i)
output.write(" ")
for j in ewords:
output.write("---")
output.write("\n")
for k in range(max(map(len, ewords))):
output.write(" ")
for word in ewords:
letter = word[k] if len(word) > k else " "
output.write(" %s " % letter)
output.write("\n")
output.write("\n")
precision = size_a_and_p / size_a
recall = size_a_and_s / size_s
aer = 1 - ((size_a_and_s + size_a_and_p) / (size_a + size_s))
output.write("Precision = %f\nRecall = %f\nAER = %f\n" % (precision, recall, aer))
print >>sys.stderr, "Precision = %f\nRecall = %f\nAER = %f\n" % (precision, recall, aer)
return True
checks = {
"align": { 'stdout': grade_align },
}
check.check_all(checks, extra_ops=('p:n:', align_ops), extra_usage=__doc__.rstrip('\n\r'))
def make_file_check_run_out(**args):
gold_path, output_path = gold_output_paths(".run.out", **args)
return {
'gold': gold_path,
'output': output_path,
'check': diff_exact,
'load_lines': True,
'backup': False,
'gold_default': [],
'name': "final output from compiled program"
}
checks = {
"contest": {},
}
check_defaults = {
'command': command,
'source_files': [codegen],
'stdout': None,
'stderr': None,
'file_checks': [make_file_check_llvm_err, make_file_check_run_out]
}
check.check_all(checks,
check_defaults,
extra_usage=__doc__.rstrip('\n\r') % (source_extension))
def check_proxy():
check_all()
return jsonify({
"status": 0,
"msg": "ok",
})