コード例 #1
0
    def MMFFctab23D(ctab, multi=False):
        """
    Generate 3D coordinates from molfile using Merck Molecular Force Field.
    CTAB is urlsafe_base64 encoded string containing single molfile or concatenation of multiple molfiles.
        """

        data = base64.urlsafe_b64decode(ctab)
        return _ctab23D(data, int(multi), True)
コード例 #2
0
    def MMFFctab23D():
        """
    Generate 3D coordinates from molfile using Merck Molecular Force Field.
    CTAB is either single molfile or SDF file.
        """

        multi = int(request.forms.get('multi', False))
        data = request.files.values()[0].file.read() if len(request.files) else request.body.read()
        return _ctab23D(data, multi, True)
コード例 #3
0
ファイル: views.py プロジェクト: thntran/chembl_beaker
def ctab23DView(data, params):
    kwargs = dict()
    kwargs['multi'] = int(params.get('multi', False))
    kwargs['sanitize'] = _parseFlag(params.get('sanitize', True))
    kwargs['removeHs'] = _parseFlag(params.get('removeHs', True))
    kwargs['strictParsing'] = _parseFlag(params.get('strictParsing', True))
    kwargs['mmff'] = _parseFlag(params.get('mmff', False))

    return _ctab23D(data, **kwargs)