Python get_optimal_alignmentの例

コード例 #1

ファイル: test_align.py プロジェクト: llazzaro/chem-fingerprints

    def test_popcnt_ssse3_combinations(self):
        arena._has_popcnt = True
        arena._has_ssse3 = True
        
        self.data = {"align8-large": "POPCNT",
                     "align8-small": "POPCNT",
                     "align-ssse3": "ssse3"}
        self.assertEquals(arena.get_optimal_alignment(300), 8)
        self.assertEquals(arena.get_optimal_alignment(800), 8)
        
        self.data = {"align8-large": "POPCNT",
                     "align8-small": "LUT8-1",
                     "align-ssse3": "ssse3"}
        self.assertEquals(arena.get_optimal_alignment(300), 64)
        self.assertEquals(arena.get_optimal_alignment(800), 8)

        self.data = {"align8-large": "LUT8-1",
                     "align8-small": "POPCNT",
                     "align-ssse3": "ssse3"}
        self.assertEquals(arena.get_optimal_alignment(300), 8)
        self.assertEquals(arena.get_optimal_alignment(800), 64)

        self.data = {"align8-large": "LUT8-1",
                     "align8-small": "LUT8-1",
                     "align-ssse3": "ssse3"}
        self.assertEquals(arena.get_optimal_alignment(300), 64)
        self.assertEquals(arena.get_optimal_alignment(800), 64)

        # And now, with SSSE3 disabled

        self.data = {"align8-large": "POPCNT",
                     "align8-small": "POPCNT",
                     "align-ssse3": "POPCNT"}
        self.assertEquals(arena.get_optimal_alignment(300), 8)
        self.assertEquals(arena.get_optimal_alignment(800), 8)
        
        self.data = {"align8-large": "POPCNT",
                     "align8-small": "LUT8-1",
                     "align-ssse3": "POPCNT"}
        self.assertEquals(arena.get_optimal_alignment(300), 8)
        self.assertEquals(arena.get_optimal_alignment(800), 8)

        self.data = {"align8-large": "LUT8-1",
                     "align8-small": "POPCNT",
                     "align-ssse3": "POPCNT"}
        self.assertEquals(arena.get_optimal_alignment(300), 8)
        self.assertEquals(arena.get_optimal_alignment(800), 8)

        self.data = {"align8-large": "LUT8-1",
                     "align8-small": "LUT8-1",
                     "align-ssse3": "POPCNT"}
        self.assertEquals(arena.get_optimal_alignment(300), 8)
        self.assertEquals(arena.get_optimal_alignment(800), 8)

コード例 #2

ファイル: test_align.py プロジェクト: llazzaro/chem-fingerprints

 def test_small(self):
     for i in range(9, 33):
         self.assertEquals(arena.get_optimal_alignment(i), 4)

コード例 #3

ファイル: test_align.py プロジェクト: llazzaro/chem-fingerprints

 def test_medium(self):
     arena._has_popcnt = False
     arena._has_ssse3 = False
     for i in range(35, 225):
         self.assertEquals(arena.get_optimal_alignment(i), 8)

コード例 #4

ファイル: test_align.py プロジェクト: llazzaro/chem-fingerprints

 def test_tiny(self):
     for i in range(1, 9):
         self.assertEquals(arena.get_optimal_alignment(i), 1)

コード例 #5

    def test_popcnt_ssse3_combinations(self):
        arena._has_popcnt = True
        arena._has_ssse3 = True

        self.data = {
            "align8-large": "POPCNT",
            "align8-small": "POPCNT",
            "align-ssse3": "ssse3"
        }
        self.assertEquals(arena.get_optimal_alignment(300), 8)
        self.assertEquals(arena.get_optimal_alignment(800), 8)

        self.data = {
            "align8-large": "POPCNT",
            "align8-small": "LUT8-1",
            "align-ssse3": "ssse3"
        }
        self.assertEquals(arena.get_optimal_alignment(300), 64)
        self.assertEquals(arena.get_optimal_alignment(800), 8)

        self.data = {
            "align8-large": "LUT8-1",
            "align8-small": "POPCNT",
            "align-ssse3": "ssse3"
        }
        self.assertEquals(arena.get_optimal_alignment(300), 8)
        self.assertEquals(arena.get_optimal_alignment(800), 64)

        self.data = {
            "align8-large": "LUT8-1",
            "align8-small": "LUT8-1",
            "align-ssse3": "ssse3"
        }
        self.assertEquals(arena.get_optimal_alignment(300), 64)
        self.assertEquals(arena.get_optimal_alignment(800), 64)

        # And now, with SSSE3 disabled

        self.data = {
            "align8-large": "POPCNT",
            "align8-small": "POPCNT",
            "align-ssse3": "POPCNT"
        }
        self.assertEquals(arena.get_optimal_alignment(300), 8)
        self.assertEquals(arena.get_optimal_alignment(800), 8)

        self.data = {
            "align8-large": "POPCNT",
            "align8-small": "LUT8-1",
            "align-ssse3": "POPCNT"
        }
        self.assertEquals(arena.get_optimal_alignment(300), 8)
        self.assertEquals(arena.get_optimal_alignment(800), 8)

        self.data = {
            "align8-large": "LUT8-1",
            "align8-small": "POPCNT",
            "align-ssse3": "POPCNT"
        }
        self.assertEquals(arena.get_optimal_alignment(300), 8)
        self.assertEquals(arena.get_optimal_alignment(800), 8)

        self.data = {
            "align8-large": "LUT8-1",
            "align8-small": "LUT8-1",
            "align-ssse3": "POPCNT"
        }
        self.assertEquals(arena.get_optimal_alignment(300), 8)
        self.assertEquals(arena.get_optimal_alignment(800), 8)

コード例 #6

 def test_medium(self):
     arena._has_popcnt = False
     arena._has_ssse3 = False
     for i in range(35, 225):
         self.assertEquals(arena.get_optimal_alignment(i), 8)

コード例 #7

 def test_small(self):
     for i in range(9, 33):
         self.assertEquals(arena.get_optimal_alignment(i), 4)

コード例 #8

 def test_tiny(self):
     for i in range(1, 9):
         self.assertEquals(arena.get_optimal_alignment(i), 1)