def __init__(self, arguments, temp_dir):
self.temp = temp_dir
VisSettings.__init__(self, arguments, qc_mode='mapvis')
self.map_name = arguments['<map-name>']
self.subject = arguments['<subject>']
self.resample = arguments['--resample-nifti']
self.snap = self.get_cifti(arguments)
self.subject_filter = arguments['--subjects-filter']
def __init__(self, arguments):
VisSettings.__init__(self, arguments, qc_mode='scrois')
## Hack to account for fact that index doesnt expect these variables
if arguments['snaps']:
self.subject = arguments['<subject>']
self.func = self.__get_input_file(arguments['<func.dtseries.nii>'])
self.pint_summary = self.__get_input_file(
arguments['<PINT_summary.csv>'])
self.left_surface = self.__get_surface('L')
self.right_surface = self.__get_surface('R')
else:
self.subject = None
self.func = None
self.pint_summary = None
self.subject_filter = arguments['--subjects-filter']
self.roi_radius = arguments['--roi-radius']
def __init__(self, arguments):
qc_mode = self.get_qc_mode(arguments)
VisSettings.__init__(self, arguments, qc_mode=qc_mode)
self.subject = arguments['<subject>']
def __init__(self, arguments):
VisSettings.__init__(self, arguments, qc_mode='func2cifti')
self.fmri_name = arguments['<OutputBasename>']
self.fwhm = arguments['<SmoothingFWHM>']
self.subject = arguments['<subject>']