def open_files(): global windows_file windows_file = open(project_paths.get_window_features_file_path(advanced), 'rb')
def open_files(): global windows_file, predictor_dump_file windows_file = open(project_paths.get_window_features_file_path(advanced), 'rb') predictor_dump_file = util.open_file(predictor_dump_path, 'wb')
def open_files(): global predictor_dump_file, windows_file predictor_dump_file = open(project_paths.get_peptide_predictor_dump_file_path(advanced), 'rb') windows_file = open(project_paths.get_window_features_file_path(advanced), 'rb')
import asap from cleavepred import util from cleavepred import project_paths from cleavepred.common import window_extraction_params ### Parse arguments ### project_paths.dataset_name = sys.argv[1] advanced = util.parse_bool(sys.argv[2]) if len(sys.argv) > 3: output_file_path = sys.argv[3] else: output_file_path = project_paths.get_window_features_file_path(advanced) ### Extract the windows ### annotated_seqs_file = None seqs_filtration_file = None csv_output_file = None extra_tracks_files = {} def open_files(): global annotated_seqs_file, seqs_filtration_file, csv_output_file, extra_tracks_files annotated_seqs_file = open(project_paths.get_annotated_seqs_file_path(), 'rb') seqs_filtration_file = open(project_paths.get_filtered_seqs_file_path(), 'rb') csv_output_file = open(output_file_path, 'wb')
def open_files(): global predictor_dump_file, windows_file predictor_dump_file = open( project_paths.get_peptide_predictor_dump_file_path(advanced), 'rb') windows_file = open(project_paths.get_window_features_file_path(advanced), 'rb')
import asap from cleavepred import util from cleavepred import project_paths from cleavepred.common import window_extraction_params ### Parse arguments ### project_paths.dataset_name = sys.argv[1] advanced = util.parse_bool(sys.argv[2]) if len(sys.argv) > 3: output_file_path = sys.argv[3] else: output_file_path = project_paths.get_window_features_file_path(advanced) ### Extract the windows ### annotated_seqs_file = None seqs_filtration_file = None csv_output_file = None extra_tracks_files = {} def open_files(): global annotated_seqs_file, seqs_filtration_file, csv_output_file, extra_tracks_files annotated_seqs_file = open(project_paths.get_annotated_seqs_file_path(), 'rb')