def setUp(self):
self.data_path = os.path.dirname(os.path.realpath(__file__))
self.votable_path = os.path.join(self.data_path, "./data/test_rich_vodml_instance.xml")
self.json_ref_path = os.path.join(self.data_path, "./data/test_rich_vodml_instance.json")
logger.info("processing %s", self.votable_path)
self.populated = False
self.vodml_instance = VodmlInstance(self.votable_path)
def map_measures(votable_path):
vodml_instance = VodmlInstance(votable_path)
vodml_instance.populate_templates()
vodml_instance.connect_join_iterators()
instance = vodml_instance.get_root_element("mango:MangoObject")
if instance is None:
raise Exception("No root element found")
while True:
inst = instance._get_next_row_instance()
if inst != None:
break
else:
break
#BUG 2 parameters arrays are nested
#TODO 2 be fixed
parameters = inst["mango:MangoObject.parameters"]
parameters = parameters[0]["mango:MangoObject.parameters"]
parameter_map = {}
for parameter in parameters:
ucd = parameter["mango:Parameter.ucd"]["@value"]
classe = parameter["mango:Parameter.measure"]["@dmtype"]
semantic = parameter["mango:Parameter.semantic"]["@value"]
description = parameter["mango:Parameter.description"]["@value"]
parameter_map[classe] = {
"class": classe,
"ucd": ucd,
"semantic": semantic,
"description": description
}
return parameter_map
file_path = os.path.dirname(os.path.realpath(__file__)) + "/../../"
if file_path not in sys.path:
sys.path.append(file_path)
from client.demo import data_dir
from utils.dict_utils import DictUtils
from client.inst_builder.vodml_instance import VodmlInstance
if __name__ == '__main__':
base_path = os.path.dirname(os.path.realpath(__file__))
votable_path = os.path.join(data_dir, "annotated_data",
"vizier_votable_avecActivity_Vo-dml-lite.xml")
vodml_instance = VodmlInstance(votable_path)
vodml_instance.populate_templates()
vodml_instance.connect_join_iterators()
instance = vodml_instance.get_root_element("voprov:Entity")
print(DictUtils.get_pretty_json(instance.json))
print("=== Mapping of the columns")
print(instance.get_flatten_data_head())
#print(instance.get_data_subset_keys())
print("=== First row: flatten mode")
while True:
inst = instance._get_next_flatten_row()
if inst != None:
print(DictUtils.get_pretty_json(inst))
break
import os, sys
file_path = os.path.dirname(os.path.realpath(__file__)) + "/../../"
if file_path not in sys.path:
sys.path.append(file_path)
from utils.dict_utils import DictUtils
from client.inst_builder.vodml_instance import VodmlInstance
from client.demo import data_dir
if __name__ == '__main__':
base_path = os.path.dirname(os.path.realpath(__file__))
votable_path = os.path.join(data_dir, "annotated_data",
"vizier_gaiadr2.annot.xml")
vodml_instance = VodmlInstance(votable_path)
vodml_instance.populate_templates()
vodml_instance.connect_join_iterators()
instance = vodml_instance.get_root_element("mango:MangoObject")
if instance is None:
raise Exception("No root element found")
print("=== Mapping of the columns")
print(instance.get_flatten_data_head())
#print(instance.get_data_subset_keys())
print("=== First row: flatten mode")
while True:
inst = instance._get_next_flatten_row()
if inst != None:
print(DictUtils.get_pretty_json(inst))
if file_path not in sys.path:
sys.path.append(file_path )
from utils.dict_utils import DictUtils
from client.inst_builder.vodml_instance import VodmlInstance
from client.demo import data_dir
from client.inst_builder.astropy_wrapper import AstropyWrapper
if __name__ == '__main__':
base_path = os.path.dirname(os.path.realpath(__file__))
votable_path = os.path.join(data_dir,
"annotated_data",
"4xmm_detections.annot.xml"
)
vodml_instance = VodmlInstance(votable_path)
vodml_instance.populate_templates(resolve_refs=True)
vodml_instance.connect_join_iterators()
table_row_instances = vodml_instance.get_root_element("mango:MangoObject")
if len(vodml_instance.table_mappers) == 0:
print("no table mapper")
sys.exit(1)
mapper_name = None
for k, v in vodml_instance.table_mappers.items():
print("process table mapper {}".format(k))
mapper_name = k
break;
while True:
inst = table_row_instances._get_next_row_instance()