def status(self):
"""
Check and update the status of the service.
"""
if self.state == service_states.UNSTARTED or \
self.state == service_states.STARTING or \
self.state == service_states.SHUTTING_DOWN or \
self.state == service_states.SHUT_DOWN or \
self.state == service_states.WAITING_FOR_USER_ACTION:
return
# Capture possible status messages from /etc/init.d/cloudera-scm-server
status_output = ['is dead and pid file exists',
'is dead and lock file exists',
'is not running',
'status is unknown']
svc_status = misc.getoutput('service cloudera-scm-server status', quiet=True)
for so in status_output:
if so in svc_status:
log.warning("Cloudera server not running: {0}.".format(so))
if self.remaining_start_attempts > 0:
log.debug("Resetting ClouderaManager service")
self.state = service_states.UNSTARTED
else:
log.error("Exceeded number of restart attempts; "
"ClouderaManager service in ERROR.")
self.state = service_states.ERROR
if not self.started:
pass
elif 'is running' in svc_status:
self.state = service_states.RUNNING
# Once the service gets running, reset the number of start attempts
self.remaining_start_attempts = NUM_START_ATTEMPTS
def add(self):
"""
Add this file system by creating a dedicated path (i.e., self.fs.mount_point)
and exporting it over NFS. Set the owner of the repo as ``ubuntu`` user.
"""
log.debug("Adding a transient FS at {0}".format(self.fs.mount_point))
# transient_nfs gets created first - make sure it's on a dedicated device
if self.fs.name == 'transient_nfs' and self.app.cloud_type == 'ec2':
self._ensure_ephemeral_disk_mounted()
misc.make_dir(self.fs.mount_point, owner='ubuntu')
# Set the device ID
cmd = "df %s | grep -v Filesystem | awk '{print $1}'" % self.fs.mount_point
self.device = misc.getoutput(cmd)
# If based on an archive, extract archive contents to the mount point
if self.from_archive:
self.fs.persistent = True
self.fs.state = service_states.CONFIGURING
# Extract the FS archive in a separate thread
log.debug("Extracting transient FS {0} from an archive in a "
"dedicated thread.".format(self.get_full_name()))
ExtractArchive(self.from_archive['url'], self.fs.mount_point,
self.from_archive['md5_sum'],
callback=self.fs.nfs_share_and_set_state).start()
else:
self.fs.nfs_share_and_set_state()
def add(self):
"""
Add this file system by creating a dedicated path (i.e., self.fs.mount_point)
and exporting it over NFS. Set the owner of the repo as ``ubuntu`` user.
"""
log.debug("Adding a transient FS at {0}".format(self.fs.mount_point))
misc.make_dir(self.fs.mount_point, owner='ubuntu')
# Make the default instance transient storage group writable
if self.fs.name == 'transient_nfs':
misc.chmod(self.fs.mount_point, 0775)
# Set the device ID
cmd = "df %s | grep -v Filesystem | awk '{print $1}'" % self.fs.mount_point
self.device = misc.getoutput(cmd)
# If based on an archive, extract archive contents to the mount point
if self.from_archive:
# Do not overwrite an existing dir structure w/ the archive content.
# This happens when a cluster is rebooted.
if self.fs.name == 'galaxy' and os.path.exists(self.app.path_resolver.galaxy_home):
log.debug("Galaxy home dir ({0}) already exists; not extracting "
"the archive ({1}) so not to overwrite it."
.format(self.app.path_resolver.galaxy_home, self.from_archive['url']))
self.fs.nfs_share_and_set_state()
else:
self.fs.persistent = True
self.fs.state = service_states.CONFIGURING
# Extract the FS archive in a separate thread
log.debug("Extracting transient FS {0} from an archive in a "
"dedicated thread.".format(self.get_full_name()))
ExtractArchive(self.from_archive['url'], self.fs.mount_point,
self.from_archive['md5_sum'],
callback=self.fs.nfs_share_and_set_state).run()
else:
self.fs.nfs_share_and_set_state()
def status(self):
"""
Check and update the status of the service.
"""
if self.state == service_states.UNSTARTED or \
self.state == service_states.STARTING or \
self.state == service_states.SHUTTING_DOWN or \
self.state == service_states.SHUT_DOWN or \
self.state == service_states.WAITING_FOR_USER_ACTION:
return
# Capture possible status messages from /etc/init.d/cloudera-scm-server
status_output = ['is dead and pid file exists',
'is dead and lock file exists',
'is not running',
'status is unknown']
svc_status = misc.getoutput('service cloudera-scm-server status', quiet=True)
for so in status_output:
if so in svc_status:
log.warning("Cloudera server not running: {0}.".format(so))
if self.remaining_start_attempts > 0:
log.debug("Resetting ClouderaManager service")
self.state = service_states.UNSTARTED
else:
log.error("Exceeded number of restart attempts; "
"ClouderaManager service in ERROR.")
self.state = service_states.ERROR
if not self.started:
pass
elif 'is running' in svc_status:
self.state = service_states.RUNNING
# Once the service gets running, reset the number of start attempts
self.remaining_start_attempts = NUM_START_ATTEMPTS
def get_installed_version(self):
"""
Returns major.minor version of nginx as a tuple
"""
version_str = misc.getoutput("{0} -v".format(self.exe))
m = re.search('nginx\/(\d).(\d+)', version_str)
return int(m.group(1)), int(m.group(2))
def configure_proftpd(self):
"""
Configure environment for running ProFTPd service.
"""
log.debug("Configuring ProFTPd")
# Because we're rewriting the proftpd config file below, update the
# password for PostgreSQL galaxyftp user
gftp_pwd = self.app.path_resolver.proftpd_galaxyftp_user_pwd
log.debug("Setting psql password for galaxyftp role to {0}".format(gftp_pwd))
# Check if galaxtftp role already exists
cmd = ('{0} - postgres -c"{1} -p {2} -tAc\\\"SELECT 1 FROM pg_roles WHERE rolname=\'galaxyftp\'\\\""'
.format(paths.P_SU, self.app.path_resolver.psql_cmd,
self.app.path_resolver.psql_db_port))
role = 'ALTER' if misc.getoutput(cmd) == '1' else 'CREATE'
# Now either CREATE or ALTER the galaxyftp role to set the permissions
cmd = ('{0} - postgres -c"{1} -p {4} -c\\\"{2} ROLE galaxyftp LOGIN PASSWORD \'{3}\'\\\""'
.format(paths.P_SU, self.app.path_resolver.psql_cmd, role,
gftp_pwd, self.app.path_resolver.psql_db_port))
misc.run(cmd)
# Update the config to match the current environment
proftpd_tmplt = conf_manager.PROFTPD_CONF_TEMPLATE
proftpd_conf_template = conf_manager.load_conf_template(proftpd_tmplt)
params = {
'galaxy_user_name': paths.GALAXY_USER_NAME,
'galaxyftp_user_name': 'galaxyftp',
'psql_galaxyftp_password': gftp_pwd,
'galaxy_db_port': self.app.path_resolver.psql_db_port,
'galaxyFS_base_path': self.app.path_resolver.galaxy_data,
'public_ip_address': self.app.cloud_interface.get_public_ip()
}
template = proftpd_conf_template.substitute(params)
# Write out the config file
with open(self.app.path_resolver.proftpd_conf_file, 'w') as f:
print >> f, template
log.debug("Updated ProFTPd conf file {0}".format(
self.app.path_resolver.proftpd_conf_file))
# Place the FTP welcome message file
urllib.urlretrieve("https://s3.amazonaws.com/cloudman/files/proftpd_welcome.txt",
"/usr/proftpd/etc/welcome_msg.txt")
# Setup the Galaxy data dir for FTP
ftp_data_dir = '%s/tmp/ftp' % self.app.path_resolver.galaxy_data
if not os.path.exists(ftp_data_dir):
os.makedirs(ftp_data_dir)
attempt_chown_galaxy(ftp_data_dir)
# Some images have vsFTPd server included so stop it first
vsFTPd_exists = misc.run('status vsftpd', quiet=True)
if vsFTPd_exists and 'start/running' in vsFTPd_exists:
log.debug("Stopping vsFTPd")
misc.run('stop vsftpd')
# Start the server now
if misc.run('/etc/init.d/proftpd start'):
self.state = service_states.RUNNING
return True
else:
log.error("Trouble starting ProFTPd")
self.state = service_states.ERROR
return False
def status(self):
"""
Check and update the status of the service.
"""
if self.state == service_states.UNSTARTED or \
self.state == service_states.STARTING or \
self.state == service_states.SHUTTING_DOWN or \
self.state == service_states.SHUT_DOWN or \
self.state == service_states.WAITING_FOR_USER_ACTION:
pass
elif 'not running' in misc.getoutput("cd {0};./cloudgene -a status".format(
self.cg_home), quiet=True):
log.error("Cloudgene server not running.")
self.state == service_states.ERROR
else:
self.state = service_states.RUNNING
def status(self):
"""
Check and update the status of the service.
"""
if self.state == service_states.UNSTARTED or \
self.state == service_states.STARTING or \
self.state == service_states.SHUTTING_DOWN or \
self.state == service_states.SHUT_DOWN or \
self.state == service_states.WAITING_FOR_USER_ACTION:
pass
elif 'not running' in misc.getoutput("cd {0};./cloudgene -a status".format(
self.cg_home), quiet=True):
log.error("Cloudgene server not running.")
self.state == service_states.ERROR
else:
self.state = service_states.RUNNING
def status(self):
"""
Update the status of this data service: make sure the mount point exists
and that it is in /etc/exports for NFS
"""
# log.debug("Checking the status of {0}".format(self.fs.mount_point))
if self.fs._service_transitioning():
# log.debug("Data service {0}
# transitioning".format(self.fs.get_full_name()))
pass
elif self.fs._service_starting():
# log.debug("Data service {0}
# starting".format(self.fs.get_full_name()))
pass
elif not os.path.exists(self.fs.mount_point):
# log.debug("Data service {0} dir {1} not there?".format(
# self.fs.get_full_name(), self.fs.mount_point))
self.fs.state = service_states.UNSTARTED
else:
try:
if NFSExport.find_mount_point_entry(self.fs.mount_point) > -1:
self.fs.state = service_states.RUNNING
# Transient storage needs to be special-cased because
# it's not a mounted disk per se but a disk on an
# otherwise default device for an instance (i.e., /mnt)
update_size_cmd = ("df --block-size 1 | grep /mnt$ | "
"awk '{print $2, $3, $5}'")
# Some AWS instance types do not have transient storage
# and /mnt is just part of / so report that file system size
if not misc.getoutput(update_size_cmd, quiet=True):
update_size_cmd = ("df --block-size 1 | grep /$ | "
"awk '{print $2, $3, $5}'")
self.fs._update_size(cmd=update_size_cmd)
else:
# Or should this set it to UNSTARTED? Because this FS is just an
# NFS-exported file path...
log.warning(
"Data service {0} not found in /etc/exports; error!".
format(self.fs.get_full_name()))
self.fs.state = service_states.ERROR
except Exception, e:
log.error(
"Error checking the status of {0} service: {1}".format(
self.fs.get_full_name(), e))
self.fs.state = service_states.ERROR
def status(self):
"""
Check and update the status of the service.
"""
if self.state == service_states.UNSTARTED or \
self.state == service_states.STARTING or \
self.state == service_states.SHUTTING_DOWN or \
self.state == service_states.SHUT_DOWN or \
self.state == service_states.WAITING_FOR_USER_ACTION:
pass
elif 'running' not in misc.getoutput('service cloudera-scm-server status',
quiet=True):
log.error("Cloudera server not running!")
self.state = service_states.ERROR
elif not self.started:
pass
else:
self.state = service_states.RUNNING
def status(self):
"""
Update the status of this data service: ake sure the mount point exists
and that it is in /etc/exports for NFS
"""
# log.debug("Checking the status of {0}".format(self.fs.mount_point))
if self.fs._service_transitioning():
# log.debug("Data service {0}
# transitioning".format(self.fs.get_full_name()))
pass
elif self.fs._service_starting():
# log.debug("Data service {0}
# starting".format(self.fs.get_full_name()))
pass
elif not os.path.exists(self.fs.mount_point):
# log.debug("Data service {0} dir {1} not there?".format(
# self.fs.get_full_name(), self.fs.mount_point))
self.fs.state = service_states.UNSTARTED
else:
try:
if NFSExport.find_mount_point_entry(self.fs.mount_point) > -1:
self.fs.state = service_states.RUNNING
# Transient storage needs to be special-cased because
# it's not a mounted disk per se but a disk on an
# otherwise default device for an instance (i.e., /mnt)
update_size_cmd = ("df --block-size 1 | grep /mnt$ | "
"awk '{print $2, $3, $5}'")
# Some AWS instance types do not have transient storage
# and /mnt is just part of / so report that file system size
if not misc.getoutput(update_size_cmd, quiet=True):
update_size_cmd = ("df --block-size 1 | grep /$ | "
"awk '{print $2, $3, $5}'")
self.fs._update_size(cmd=update_size_cmd)
else:
# Or should this set it to UNSTARTED? Because this FS is just an
# NFS-exported file path...
log.warning("Data service {0} not found in /etc/exports; error!"
.format(self.fs.get_full_name()))
self.fs.state = service_states.ERROR
except Exception, e:
log.error("Error checking the status of {0} service: {1}".format(
self.fs.get_full_name(), e))
self.fs.state = service_states.ERROR
def check_postgres(self):
"""
Check if PostgreSQL server is running and if `galaxy` database exists.
:rtype: bool
:return: ``True`` if the server is running and `galaxy` database exists,
``False`` otherwise.
"""
# log.debug("\tChecking PostgreSQL")
if self._check_daemon('postgres'):
# log.debug("\tPostgreSQL daemon running. Trying to connect and
# select tables.")
cmd = ('%s - postgres -c "%s/psql -p %s -c \\\"SELECT datname FROM PG_DATABASE;\\\" "'
% (paths.P_SU, self.app.path_resolver.pg_home, self.psql_port))
dbs = misc.getoutput(cmd, quiet=True)
if dbs.find('galaxy') > -1:
# log.debug("\tPostgreSQL daemon on port {0} OK, 'galaxy' database exists."
# .format(self.psql_port))
return True
return False
def reconfigure(self, setup_ssl):
"""
(Re)Generate Nginx configuration files and reload the server process.
:type setup_ssl: boolean
:param setup_ssl: if set, force HTTPS with a self-signed certificate.
"""
if self.exe:
log.debug("Updating Nginx config at {0}".format(self.conf_file))
params = {}
# Customize the appropriate nginx template
if "1.4" in misc.getoutput("{0} -v".format(self.exe)):
nginx_tmplt = conf_manager.NGINX_14_CONF_TEMPLATE
params = {'galaxy_user_name': paths.GALAXY_USER_NAME,
'nginx_conf_dir': self.conf_dir}
if setup_ssl:
log.debug("Using Nginx v1.4+ template w/ SSL")
# Generate a self-signed certificate
log.info("Generating self-signed certificate for SSL encryption")
cert_home = "/root/.ssh/"
certfile = os.path.join(cert_home, "instance_selfsigned_cert.pem")
keyfile = os.path.join(cert_home, "instance_selfsigned_key.pem")
misc.run("yes '' | openssl req -x509 -nodes -days 3650 -newkey "
"rsa:1024 -keyout " + keyfile + " -out " + certfile)
misc.run("chmod 440 " + keyfile)
server_tmplt = conf_manager.NGINX_SERVER_SSL
self.ssl_is_on = True
else:
log.debug("Using Nginx v1.4+ template")
server_tmplt = conf_manager.NGINX_SERVER
self.ssl_is_on = False
else:
server_tmplt = ""
nginx_tmplt = conf_manager.NGINX_CONF_TEMPLATE
self.ssl_is_on = False
params = {
'galaxy_user_name': paths.GALAXY_USER_NAME,
'galaxy_home': paths.P_GALAXY_HOME,
'galaxy_data': self.app.path_resolver.galaxy_data,
}
log.debug("Using Nginx pre-v1.4 template")
# Write out the main nginx.conf file
self._write_template_file(nginx_tmplt, params, self.conf_file)
# Write out the default server block file
if server_tmplt:
# This means we're dealing with Nginx v1.4+ & split conf files
upstream_servers = self._define_upstream_servers()
params = {
'upstream_servers': upstream_servers,
'nginx_conf_dir': self.conf_dir
}
conf_file = os.path.join(self.conf_dir, 'sites-enabled', 'default.server')
self._write_template_file(server_tmplt, params, conf_file)
# Pulsar has it's own server config
pulsar_svc = self.app.manager.service_registry.get_active('Pulsar')
if pulsar_svc:
pulsar_tmplt = conf_manager.NGINX_SERVER_PULSAR
params = {'pulsar_port': pulsar_svc.pulsar_port}
conf_file = os.path.join(self.conf_dir, 'sites-enabled', 'pulsar.server')
self._write_template_file(pulsar_tmplt, params, conf_file)
# Write out the location blocks for hosted services
# Always include default locations (CloudMan, VNC, error)
default_tmplt = conf_manager.NGINX_DEFAULT
conf_file = os.path.join(self.conf_dir, 'sites-enabled', 'default.locations')
self._write_template_file(default_tmplt, {}, conf_file)
# Now add running services
# Galaxy Reports
reports_svc = self.app.manager.service_registry.get_active('GalaxyReports')
reports_conf_file = os.path.join(self.conf_dir, 'sites-enabled', 'reports.locations')
if reports_svc:
reports_tmplt = conf_manager.NGINX_GALAXY_REPORTS
params = {'reports_port': reports_svc.reports_port}
self._write_template_file(reports_tmplt, params, reports_conf_file)
else:
misc.delete_file(reports_conf_file)
# Galaxy
galaxy_svc = self.app.manager.service_registry.get_active('Galaxy')
gxy_conf_file = os.path.join(self.conf_dir, 'sites-enabled', 'galaxy.locations')
if galaxy_svc:
galaxy_tmplt = conf_manager.NGINX_GALAXY
params = {
'galaxy_home': paths.P_GALAXY_HOME,
'galaxy_data': self.app.path_resolver.galaxy_data
}
self._write_template_file(galaxy_tmplt, params, gxy_conf_file)
else:
misc.delete_file(gxy_conf_file)
# Cloudera Manager
cmf_svc = self.app.manager.service_registry.get_active('ClouderaManager')
cmf_conf_file = os.path.join(self.conf_dir, 'sites-enabled', 'cmf.locations')
if cmf_svc:
cmf_tmplt = conf_manager.NGINX_CLOUDERA_MANAGER
self._write_template_file(cmf_tmplt, {}, cmf_conf_file)
else:
misc.delete_file(cmf_conf_file)
# Cloudgene
cg_svc = self.app.manager.service_registry.get_active('Cloudgene')
cg_conf_file = os.path.join(self.conf_dir, 'sites-enabled', 'cloudgene.locations')
if cg_svc:
cg_tmplt = conf_manager.NGINX_CLOUDGENE
params = {'cg_port': cg_svc.port}
self._write_template_file(cg_tmplt, params, cg_conf_file)
else:
misc.delete_file(cg_conf_file)
self.reload()
else:
log.warning("Cannot find nginx executable to reload nginx config (got"
" '{0}')".format(self.exe))
def configure_proftpd(self):
"""
Configure environment for running ProFTPd service.
"""
log.debug("Configuring ProFTPd")
# Because we're rewriting the proftpd config file below, update the
# password for PostgreSQL galaxyftp user
gftp_pwd = self.app.path_resolver.proftpd_galaxyftp_user_pwd
log.debug(
"Setting psql password for galaxyftp role to {0}".format(gftp_pwd))
# Check if galaxtftp role already exists
cmd = (
'{0} - postgres -c"{1} -p {2} -tAc\\\"SELECT 1 FROM pg_roles WHERE rolname=\'galaxyftp\'\\\""'
.format(paths.P_SU, self.app.path_resolver.psql_cmd,
self.app.path_resolver.psql_db_port))
role = 'ALTER' if misc.getoutput(cmd) == '1' else 'CREATE'
# Now either CREATE or ALTER the galaxyftp role to set the permissions
cmd = (
'{0} - postgres -c"{1} -p {4} -c\\\"{2} ROLE galaxyftp LOGIN PASSWORD \'{3}\'\\\""'
.format(paths.P_SU, self.app.path_resolver.psql_cmd, role,
gftp_pwd, self.app.path_resolver.psql_db_port))
misc.run(cmd)
# Update the config to match the current environment
proftpd_tmplt = conf_manager.PROFTPD_CONF_TEMPLATE
proftpd_conf_template = conf_manager.load_conf_template(proftpd_tmplt)
params = {
'galaxy_user_name': paths.GALAXY_USER_NAME,
'galaxyftp_user_name': 'galaxyftp',
'psql_galaxyftp_password': gftp_pwd,
'galaxy_db_port': self.app.path_resolver.psql_db_port,
'galaxyFS_base_path': self.app.path_resolver.galaxy_data,
'public_ip_address': self.app.cloud_interface.get_public_ip()
}
template = proftpd_conf_template.substitute(params)
# Write out the config file
with open(self.app.path_resolver.proftpd_conf_file, 'w') as f:
print >> f, template
log.debug("Updated ProFTPd conf file {0}".format(
self.app.path_resolver.proftpd_conf_file))
# Place the FTP welcome message file
urllib.urlretrieve(
"https://s3.amazonaws.com/cloudman/files/proftpd_welcome.txt",
"/usr/proftpd/etc/welcome_msg.txt")
# Setup the Galaxy data dir for FTP
ftp_data_dir = '%s/tmp/ftp' % self.app.path_resolver.galaxy_data
if not os.path.exists(ftp_data_dir):
os.makedirs(ftp_data_dir)
attempt_chown_galaxy(ftp_data_dir)
# Some images have vsFTPd server included so stop it first
vsFTPd_exists = misc.run('status vsftpd', quiet=True)
if vsFTPd_exists and 'start/running' in vsFTPd_exists:
log.debug("Stopping vsFTPd")
misc.run('stop vsftpd')
# Start the server now
if misc.run('/etc/init.d/proftpd start'):
self.state = service_states.RUNNING
return True
else:
log.error("Trouble starting ProFTPd")
self.state = service_states.ERROR
return False
def reconfigure(self, setup_ssl):
"""
(Re)Generate Nginx configuration files and reload the server process.
:type setup_ssl: boolean
:param setup_ssl: if set, force HTTPS with a self-signed certificate.
"""
if self.exe:
log.debug("Updating Nginx config at {0}".format(self.conf_file))
params = {}
# Customize the appropriate nginx template
if "1.4" in misc.getoutput("{0} -v".format(self.exe)):
nginx_tmplt = conf_manager.NGINX_14_CONF_TEMPLATE
params = {
'galaxy_user_name': paths.GALAXY_USER_NAME,
'nginx_conf_dir': self.conf_dir
}
if setup_ssl:
log.debug("Using Nginx v1.4+ template w/ SSL")
# Generate a self-signed certificate
log.info(
"Generating self-signed certificate for SSL encryption"
)
cert_home = "/root/.ssh/"
certfile = os.path.join(cert_home,
"instance_selfsigned_cert.pem")
keyfile = os.path.join(cert_home,
"instance_selfsigned_key.pem")
misc.run(
"yes '' | openssl req -x509 -nodes -days 3650 -newkey "
"rsa:1024 -keyout " + keyfile + " -out " + certfile)
misc.run("chmod 440 " + keyfile)
server_tmplt = conf_manager.NGINX_SERVER_SSL
self.ssl_is_on = True
else:
log.debug("Using Nginx v1.4+ template")
server_tmplt = conf_manager.NGINX_SERVER
self.ssl_is_on = False
else:
server_tmplt = ""
nginx_tmplt = conf_manager.NGINX_CONF_TEMPLATE
self.ssl_is_on = False
params = {
'galaxy_user_name': paths.GALAXY_USER_NAME,
'galaxy_home': paths.P_GALAXY_HOME,
'galaxy_data': self.app.path_resolver.galaxy_data,
}
log.debug("Using Nginx pre-v1.4 template")
# Write out the main nginx.conf file
self._write_template_file(nginx_tmplt, params, self.conf_file)
# Write out the default server block file
if server_tmplt:
# This means we're dealing with Nginx v1.4+ & split conf files
upstream_servers = self._define_upstream_servers()
params = {
'upstream_servers': upstream_servers,
'nginx_conf_dir': self.conf_dir
}
conf_file = os.path.join(self.conf_dir, 'sites-enabled',
'default.server')
self._write_template_file(server_tmplt, params, conf_file)
# Pulsar has it's own server config
pulsar_svc = self.app.manager.service_registry.get_active(
'Pulsar')
if pulsar_svc:
pulsar_tmplt = conf_manager.NGINX_SERVER_PULSAR
params = {'pulsar_port': pulsar_svc.pulsar_port}
conf_file = os.path.join(self.conf_dir, 'sites-enabled',
'pulsar.server')
self._write_template_file(pulsar_tmplt, params, conf_file)
# Write out the location blocks for hosted services
# Always include default locations (CloudMan, VNC, error)
default_tmplt = conf_manager.NGINX_DEFAULT
conf_file = os.path.join(self.conf_dir, 'sites-enabled',
'default.locations')
self._write_template_file(default_tmplt, {}, conf_file)
# Now add running services
# Galaxy Reports
reports_svc = self.app.manager.service_registry.get_active(
'GalaxyReports')
reports_conf_file = os.path.join(self.conf_dir,
'sites-enabled',
'reports.locations')
if reports_svc:
reports_tmplt = conf_manager.NGINX_GALAXY_REPORTS
params = {'reports_port': reports_svc.reports_port}
self._write_template_file(reports_tmplt, params,
reports_conf_file)
else:
misc.delete_file(reports_conf_file)
# Galaxy
galaxy_svc = self.app.manager.service_registry.get_active(
'Galaxy')
gxy_conf_file = os.path.join(self.conf_dir, 'sites-enabled',
'galaxy.locations')
if galaxy_svc:
galaxy_tmplt = conf_manager.NGINX_GALAXY
params = {
'galaxy_home': paths.P_GALAXY_HOME,
'galaxy_data': self.app.path_resolver.galaxy_data
}
self._write_template_file(galaxy_tmplt, params,
gxy_conf_file)
else:
misc.delete_file(gxy_conf_file)
# Cloudera Manager
cmf_svc = self.app.manager.service_registry.get_active(
'ClouderaManager')
cmf_conf_file = os.path.join(self.conf_dir, 'sites-enabled',
'cmf.locations')
if cmf_svc:
cmf_tmplt = conf_manager.NGINX_CLOUDERA_MANAGER
self._write_template_file(cmf_tmplt, {}, cmf_conf_file)
else:
misc.delete_file(cmf_conf_file)
# Cloudgene
cg_svc = self.app.manager.service_registry.get_active(
'Cloudgene')
cg_conf_file = os.path.join(self.conf_dir, 'sites-enabled',
'cloudgene.locations')
if cg_svc:
cg_tmplt = conf_manager.NGINX_CLOUDGENE
params = {'cg_port': cg_svc.port}
self._write_template_file(cg_tmplt, params, cg_conf_file)
else:
misc.delete_file(cg_conf_file)
# Reload the configuration if the process is running
if self._check_daemon('nginx'):
self.reload()
else:
log.debug("nginx process not running; did not reload config.")
else:
log.warning(
"Cannot find nginx executable to reload nginx config (got"
" '{0}')".format(self.exe))