def __init__(self, id, name='', functional=True, root_dir=None, pdb_file_type='mmtf'):
Gene.__init__(self, id=id, name=name, functional=functional)
self.pdb_file_type = pdb_file_type
# Create directories
self._root_dir = None
if root_dir:
self.root_dir = root_dir
self.protein = Protein(ident=id, root_dir=self.gene_dir, pdb_file_type=self.pdb_file_type)
def __json_decode__(self, **attrs):
Gene.__init__(self, id=attrs['id'])
for k, v in attrs.items():
if k not in ['id']:
setattr(self, k, v)