def onReset(self, event=None):
self.sizer.Remove(self.panel)
self.panel.Destroy()
self.panel = experimentConfigPanel.ExperimentConfigPanel(
self,
resizeCallback=self.onExperimentPanelResize,
resetCallback=self.onReset)
self.sizer.Prepend(self.panel)
self.sizer.Layout()
self.Refresh()
self.SetSizerAndFit(self.sizer)
return self.panel
def onExperimentPanelReset(self):
self.panelSizer.Remove(self.experimentPanel)
self.experimentPanel.Destroy()
self.experimentPanel = experimentConfigPanel.ExperimentConfigPanel(
self.panel, resizeCallback = self.onExperimentPanelResize,
resetCallback = self.onExperimentPanelReset,
configKey = 'multiSiteExperimentPanel')
self.experimentPanel.filepath_panel.SetTemplate(_FILENAME_TEMPLATE)
# Put the experiment panel back into the sizer immediately after
# the button that shows/hides it.
for i, item in enumerate(self.panelSizer.GetChildren()):
if item.GetWindow() is self.showScanButton:
self.panelSizer.Insert(i + 1, self.experimentPanel, 0,
wx.ALIGN_CENTER | wx.ALL, 5)
self.panelSizer.Layout()
self.Refresh()
self.panel.SetSizerAndFit(self.panelSizer)
return self.experimentPanel
def __init__(self, parent):
super().__init__(parent,
title="OMX single-site experiment",
style=wx.DEFAULT_DIALOG_STYLE | wx.RESIZE_BORDER)
self.SetExtraStyle(wx.WS_EX_VALIDATE_RECURSIVELY)
self.Bind(EVT_COCKPIT_VALIDATION_ERROR, self.onValidationError)
self.sizer = wx.BoxSizer(wx.VERTICAL)
## Contains all the actual UI elements beyond the dialog window itself.
self.panel = experimentConfigPanel.ExperimentConfigPanel(
self,
resizeCallback=self.onExperimentPanelResize,
resetCallback=self.onReset)
self.sizer.Add(self.panel)
self.buttonBox = wx.BoxSizer(wx.HORIZONTAL)
button = wx.Button(self, -1, "Reset")
button.SetToolTip(
wx.ToolTip("Reload this window with all default values"))
button.Bind(wx.EVT_BUTTON, self.onReset)
self.buttonBox.Add(button, 0, wx.ALIGN_LEFT | wx.ALL, 5)
self.buttonBox.Add((1, 1), 1, wx.EXPAND)
button = wx.Button(self, wx.ID_CANCEL, "Cancel")
self.buttonBox.Add(button, 0, wx.ALL, 5)
button = wx.Button(self, wx.ID_OK, "Start")
button.SetToolTip(wx.ToolTip("Start the experiment"))
button.Bind(wx.EVT_BUTTON, self.onStart)
self.buttonBox.Add(button, 0, wx.ALL, 5)
self.sizer.Add(self.buttonBox, 1, wx.EXPAND)
self.statusbar = wx.StaticText(self,
-1,
name="status bar",
style=wx.ALIGN_RIGHT
| wx.ST_NO_AUTORESIZE)
self.sizer.Add(self.statusbar, 0, wx.EXPAND)
self.SetSizerAndFit(self.sizer)
def __init__(self, parent):
super().__init__(parent,
title="OMX multi-site experiment",
style=wx.DEFAULT_DIALOG_STYLE | wx.RESIZE_BORDER)
## Whether or not we should abort the current experiment.
self.shouldAbort = False
events.subscribe(events.USER_ABORT, self.onAbort)
## List of all light handlers.
self.allLights = depot.getHandlersOfType(depot.LIGHT_TOGGLE)
## List of booleans indicating which lights were active at the
# start of the experiment.
self.activeLights = [None for l in self.allLights]
## User's last-used inputs.
self.settings = cockpit.util.userConfig.getValue(
'multiSiteExperiment',
default={
'numCycles': '10',
'cycleDuration': '60',
'delayBeforeStarting': '0',
'delayBeforeImaging': '0',
'fileBase': '',
'shouldCustomizeLightFrequencies': False,
'shouldOptimizeSiteOrder': True,
'lightFrequencies': ['1' for l in self.allLights],
})
## Contains self.panel
self.sizer = wx.BoxSizer(wx.VERTICAL)
## Contains all UI widgets.
self.panel = wx.Panel(self)
## Sizer for self.panel.
self.panelSizer = wx.BoxSizer(wx.VERTICAL)
## Sizer for all controls except the start/cancel/reset buttons.
controlsSizer = wx.BoxSizer(wx.HORIZONTAL)
## Sizer for a single column of controls.
columnSizer = wx.BoxSizer(wx.VERTICAL)
## Panel for selecting sites to visit.
self.sitesPanel = cockpit.gui.dialogs.enumerateSitesPanel.EnumerateSitesPanel(
self.panel,
label="Sites to visit:",
size=(200, -1),
minSize=CONTROL_SIZE)
columnSizer.Add(self.sitesPanel)
self.numCycles = guiUtils.addLabeledInput(
self.panel,
columnSizer,
label="Number of cycles:",
defaultValue=self.settings['numCycles'],
size=FIELD_SIZE,
minSize=CONTROL_SIZE)
self.cycleDuration = guiUtils.addLabeledInput(
self.panel,
columnSizer,
label="Min cycle duration (s):",
defaultValue=self.settings['cycleDuration'],
size=FIELD_SIZE,
minSize=CONTROL_SIZE,
helperString=
"Minimum amount of time to pass between each cycle. If the " +
"cycle finishes early, then I will wait until this much " +
"time has passed. You can enter multiple values here " +
"separated by commas; I will then use each wait time in " +
"sequence; e.g. \"60,120,180\" means the first " +
"cycle takes one minute, the second two, the third three, " +
"the fourth one, the fifth two, and so on.")
self.delayBeforeStarting = guiUtils.addLabeledInput(
self.panel,
columnSizer,
label="Delay before starting (min):",
defaultValue=self.settings['delayBeforeStarting'],
size=FIELD_SIZE,
minSize=CONTROL_SIZE,
helperString=
"Amount of time to wait before starting the experiment. " +
"This is useful if you have a lengthy period to wait for " +
"your cells to reach the stage you're interested in, for " +
"example.")
self.delayBeforeImaging = guiUtils.addLabeledInput(
self.panel,
columnSizer,
label="Delay before imaging (s):",
defaultValue=self.settings['delayBeforeImaging'],
size=FIELD_SIZE,
minSize=CONTROL_SIZE,
helperString="Amount of time to wait after moving to a site before "
+ "I start imaging the site. This is mostly useful if " +
"your stage needs time to stabilize after moving.")
self.fileBase = guiUtils.addLabeledInput(
self.panel,
columnSizer,
label="Data file base name:",
defaultValue=self.settings['fileBase'],
size=FIELD_SIZE,
minSize=CONTROL_SIZE)
controlsSizer.Add(columnSizer, 0, wx.ALL, 5)
columnSizer = wx.BoxSizer(wx.VERTICAL)
## We don't necessarily have this option.
self.shouldPowerDownWhenDone = None
powerHandlers = depot.getHandlersOfType(depot.POWER_CONTROL)
if powerHandlers:
# There are devices that we could potentially turn off at end of
# experiment.
self.shouldPowerDownWhenDone = guiUtils.addLabeledInput(
self.panel,
columnSizer,
label="Power off devices when done:",
control=wx.CheckBox(self.panel),
labelHeightAdjustment=0,
border=3,
flags=wx.ALL,
helperString=
"If checked, then at the end of the experiment, I will " +
"power down all the devices I can.")
self.shouldOptimizeSiteOrder = guiUtils.addLabeledInput(
self.panel,
columnSizer,
label="Optimize route:",
defaultValue=self.settings['shouldOptimizeSiteOrder'],
control=wx.CheckBox(self.panel),
labelHeightAdjustment=0,
border=3,
flags=wx.ALL,
helperString=
"If checked, then I will calculate an ordering of the sites " +
"that will minimize the total time spent in transit; " +
"otherwise, I will use the order you specify.")
self.shouldCustomizeLightFrequencies = guiUtils.addLabeledInput(
self.panel,
columnSizer,
label="Customize light frequencies:",
defaultValue=self.settings['shouldCustomizeLightFrequencies'],
control=wx.CheckBox(self.panel),
labelHeightAdjustment=0,
border=3,
flags=wx.ALL,
helperString=
"This allows you to set up experiments where different " +
"light sources are enabled for different cycles. If you " +
"set a frequency of 5 for a given light, for example, " +
"then that light will only be used for every 5th pass " +
"(the 1st, 6th, 11th, etc. cycles). You can specify an " +
"offset, too: \"5 + 1\" would enable the light for the " +
"2nd, 7th, 12th, etc. cycles.")
self.shouldCustomizeLightFrequencies.Bind(
wx.EVT_CHECKBOX, self.onCustomizeLightFrequencies)
self.lightFrequenciesPanel = wx.Panel(self.panel,
style=wx.BORDER_SUNKEN
| wx.TAB_TRAVERSAL)
self.lightFrequencies, sizer = guiUtils.makeLightsControls(
self.lightFrequenciesPanel,
[str(l.wavelength) for l in self.allLights],
self.settings['lightFrequencies'])
self.lightFrequenciesPanel.SetSizerAndFit(sizer)
self.lightFrequenciesPanel.Show(
self.settings['shouldCustomizeLightFrequencies'])
columnSizer.Add(self.lightFrequenciesPanel, 0,
wx.LEFT | wx.RIGHT | wx.BOTTOM, 5)
controlsSizer.Add(columnSizer, 0, wx.ALL, 5)
self.panelSizer.Add(controlsSizer)
## Controls whether or not the scanning experiment's parameters are
# shown.
self.showScanButton = wx.Button(self.panel, -1,
"Show experiment settings")
self.showScanButton.Bind(wx.EVT_BUTTON, self.onShowScanButton)
self.panelSizer.Add(self.showScanButton, 0, wx.ALIGN_CENTER | wx.TOP,
5)
## This panel configures the experiment we perform when visiting sites.
self.experimentPanel = experimentConfigPanel.ExperimentConfigPanel(
self.panel,
resizeCallback=self.onExperimentPanelResize,
resetCallback=self.onExperimentPanelReset,
configKey='multiSiteExperimentPanel',
shouldShowFileControls=False)
self.panelSizer.Add(self.experimentPanel, 0, wx.ALIGN_CENTER | wx.ALL,
5)
self.experimentPanel.Hide()
buttonSizer = wx.BoxSizer(wx.HORIZONTAL)
button = wx.Button(self.panel, -1, "Reset")
button.SetToolTip(
wx.ToolTip("Reload this window with all default values"))
button.Bind(wx.EVT_BUTTON, self.onReset)
buttonSizer.Add(button, 0, wx.ALL, 5)
buttonSizer.Add((1, 0), 1, wx.EXPAND)
button = wx.Button(self.panel, wx.ID_CANCEL, "Cancel")
buttonSizer.Add(button, 0, wx.ALL, 5)
button = wx.Button(self.panel, wx.ID_OK, "Start")
button.SetToolTip(wx.ToolTip("Start the experiment"))
button.Bind(wx.EVT_BUTTON, self.onStart)
buttonSizer.Add(button, 0, wx.ALL, 5)
self.panelSizer.Add(buttonSizer, 0, wx.ALL, 5)
self.panel.SetSizerAndFit(self.panelSizer)
self.sizer.Add(self.panel)
self.SetSizerAndFit(self.sizer)