def test_get_result_path(self):
"""Tests nupack result path"""
n = Nupack(InputHandler='_input_as_lines')
res = n(self.input)
self.assertEqualItems(res.keys(),['StdOut','StdErr','ExitStatus',
'pair','ene'])
assert res['pair'] is not None
assert res['ene'] is not None
res.cleanUp()
def test_input_as_lines(self):
"""Test nupack input as lines"""
n = Nupack(InputHandler='_input_as_lines')
exp = '%s\n' % '\n'.join([str(i).strip('\n') for i in nupack_stdout])
res = n(self.input)
obs = res['StdOut'].read()
self.assertEqual(obs,exp)
res.cleanUp()
def test_input_as_string(self):
"""Test nupack input as string"""
n = Nupack()
exp = '%s\n' % '\n'.join([str(i).strip('\n') for i in nupack_stdout])
f = open('/tmp/single.fasta','w')
txt = '\n'.join([str(i).strip('\n') for i in self.input])
f.write(txt)
f.close()
res = n('/tmp/single.fasta')
obs = res['StdOut'].read()
self.assertEqual(obs,exp)
res.cleanUp()
remove('/tmp/single.fasta')