def test_aminoAcids(self):
"""BaseUsage aminoAcids should give the same results as the codons"""
known_data = {
'AAA' : .6 * .6 * .6,
'AAU' : .6 * .6 * .4,
'AUA' : .6 * .4 * .6,
'AUU' : .6 * .4 * .4,
'UAA' : .4 * .6 * .6,
'UAU' : .4 * .6 * .4,
'UUA' : .4 * .4 * .6,
'UUU' : .4 * .4 * .4,
}
known = CodonUsage(known_data)
b = BaseUsage({'a':3, 'T':2, 'X':1})
self.assertEqual(b.aminoAcids(), known.aminoAcids())
#check that the genetic code is passed through correctly
all_g = GeneticCode('G'*64)
self.assertEqual(b.aminoAcids(all_g), AminoAcidUsage({'G':1}))
def test_aminoAcids(self):
"""BaseUsage aminoAcids should give the same results as the codons"""
known_data = {
'AAA': .6 * .6 * .6,
'AAU': .6 * .6 * .4,
'AUA': .6 * .4 * .6,
'AUU': .6 * .4 * .4,
'UAA': .4 * .6 * .6,
'UAU': .4 * .6 * .4,
'UUA': .4 * .4 * .6,
'UUU': .4 * .4 * .4,
}
known = CodonUsage(known_data)
b = BaseUsage({'a': 3, 'T': 2, 'X': 1})
self.assertEqual(b.aminoAcids(), known.aminoAcids())
#check that the genetic code is passed through correctly
all_g = GeneticCode('G' * 64)
self.assertEqual(b.aminoAcids(all_g), AminoAcidUsage({'G': 1}))
