def test_createCommonHeader(self):
"""create_commor_header should return lines for sff common header"""
a = [Flowgram('0.5 1.0 4.0 0.0 1.5 0.0 0.0 2.0', Name='a',
header_info = {'Bases':'TACCCCTTGG','Name Length':'14'}),
Flowgram('1.5 1.0 0.0 0.0 2.5 1.0 2.0 1.0', Name = 'b',
header_info = {'Bases':'TTATTTACCG','Name Length':'14'})]
f = FlowgramCollection(a, header_info = {'Flow Chars':'TACG'})
self.assertEqual('\n'.join(f.createCommonHeader()),
"""Common Header:\n Flow Chars:\tTACG""")
def test_createCommonHeader(self):
"""create_commor_header should return lines for sff common header"""
a = [Flowgram('0.5 1.0 4.0 0.0 1.5 0.0 0.0 2.0', Name='a',
header_info = {'Bases':'TACCCCTTGG','Name Length':'14'}),
Flowgram('1.5 1.0 0.0 0.0 2.5 1.0 2.0 1.0', Name = 'b',
header_info = {'Bases':'TTATTTACCG','Name Length':'14'})]
f = FlowgramCollection(a, header_info = {'Flow Chars':'TACG'})
self.assertEqual('\n'.join(f.createCommonHeader()),
"""Common Header:\n Flow Chars:\tTACG""")
def test_createCommonHeader(self):
"""create_commor_header should return lines for sff common header"""
a = [
Flowgram(
"0.5 1.0 4.0 0.0 1.5 0.0 0.0 2.0", Name="a", header_info={"Bases": "TACCCCTTGG", "Name Length": "14"}
),
Flowgram(
"1.5 1.0 0.0 0.0 2.5 1.0 2.0 1.0", Name="b", header_info={"Bases": "TTATTTACCG", "Name Length": "14"}
),
]
f = FlowgramCollection(a, header_info={"Flow Chars": "TACG"})
self.assertEqual("\n".join(f.createCommonHeader()), """Common Header:\n Flow Chars:\tTACG""")
