#!/usr/bin/python import os from common import run_quast, contigs_1k_2, reference_1k, assert_metric name = os.path.basename(__file__)[5:-3] run_quast(name, contigs=[contigs_1k_2], params='-R ' + reference_1k + ' -G genes_1k.txt') assert_metric(name, '# genes', ['1 + 1 part'])
#!/usr/bin/python import os from common import run_quast, contigs_1k_2, reference_1k, assert_metric name = os.path.basename(__file__)[5:-3] run_quast(name, contigs=[contigs_1k_2], params='-R ' + reference_1k + ' -G genes_1k_simple.gff') assert_metric(name, '# genes', ['1 + 1 part'])
#!/usr/bin/python import os from common import run_quast, contigs_1k_2, assert_metric name = os.path.basename(__file__)[5:-3] run_quast(name, contigs=[contigs_1k_2], params='-R reference_1k.fa') assert_metric(name, 'NGA50', ['760']) run_quast(name, contigs=[contigs_1k_2], params='-R reference_1k.fa.gz') assert_metric(name, 'NGA50', ['760'])
#!/usr/bin/python import os from common import run_quast, contigs_1k_2, reference_1k, assert_metric name = os.path.basename(__file__)[5:-3] run_quast(name, contigs=[contigs_1k_2], params='-R ' + reference_1k + ' -G genes_1k_verbose_id_does_not_match.gff') assert_metric(name, '# genes', ['1 + 1 part'])
#!/usr/bin/python import os from common import run_quast, contigs_1k_2, reference_1k, assert_metric name = os.path.basename(__file__)[5:-3] run_quast(name, contigs=[contigs_1k_2], params='-R ' + reference_1k + ' -G genes_1k.txt') assert_metric(name, '# genomic features', ['1 + 1 part'])