def setUp(self):
global DBDRIVER, DBTYPE, DBHOST, DBUSER, DBPASSWD, TESTDB, DBSCHEMA
global SYSTEM, SQL_FILE
Entrez.email = "*****@*****.**"
# create TESTDB
TESTDB = create_database()
# load the database
db_name = "biosql-test"
self.server = BioSeqDatabase.open_database(driver=DBDRIVER,
user=DBUSER,
passwd=DBPASSWD,
host=DBHOST,
db=TESTDB)
# remove the database if it already exists
try:
self.server[db_name]
self.server.remove_database(db_name)
except KeyError:
pass
self.db = self.server.new_database(db_name)
# get the GenBank file we are going to put into it
self.iterator = SeqIO.parse("GenBank/cor6_6.gb", "gb")
def setUp(self):
global DBDRIVER, DBTYPE, DBHOST, DBUSER, DBPASSWD, TESTDB, DBSCHEMA
global SYSTEM, SQL_FILE
Entrez.email = "*****@*****.**"
# create TESTDB
TESTDB = create_database()
# load the database
db_name = "biosql-test"
self.server = BioSeqDatabase.open_database(driver=DBDRIVER,
user=DBUSER, passwd=DBPASSWD,
host=DBHOST, db=TESTDB)
# remove the database if it already exists
try:
self.server[db_name]
self.server.remove_database(db_name)
except KeyError:
pass
self.db = self.server.new_database(db_name)
# get the GenBank file we are going to put into it
self.iterator = SeqIO.parse("GenBank/cor6_6.gb", "gb")