from CellScribe import * from compartments import e, c from metabolites import * from genes import SP_1527, SP_1891, SP_0366, SP_1887, SP_1888, SP_1889 , SP_1890 oligopeptide = Metabolite("oligopeptide", kegg="C00098") oligopeptide_rxn = Reaction(name="oligopeptide_rxn", reactants=e(oligopeptide) + H20 + atp, products=oligopeptide + adp + phosphate) GeneAssociation(oligopeptide_rxn, SP_1527 or SP_1891 or SP_0366 or SP_1887 or SP_1888 or SP_1889 or SP_1890 )
from CellScribe import * from compartments import e, c from metabolites import * from genes import SP_0452, SP_0453, SP_1034, SP_1035, SP_0609, SP_0607, SP_0608, SP_0610, SP_0749, \ SP_0750, SP_0751, SP_0752, SP_0753, SP_1396, SP_1397, SP_1398, SP_1399, SP_1400 l_lysine_rxn = Reaction(name="l_lysine_rxn", reactants=e(l_lysine) + h2o + atp, products=l_lysine + adp + phosphate, pairs=[(atp, adp)], minors=[atp, adp]) GeneAssociation(lysine_rxn, SP_0452 & SP_0453) l_glutamate_rxn= Reaction(name="l-glutamate_rxn", reactants=e(l_glutamate) + h2o + atp, products=l_glutamate + adp + phosphate) GeneAssociation(l_glutamate_rxn, SP_0609 & SP_0607 & SP_0608 & SP_0610) l_valine_rxn = Reaction(name="l_valine_rxn", reactants=e(l_valine) + h2o + atp, products=l_valine + adp + phosphate, pairs=[(e(l_valine), l_valine)] GeneAssociation(l_valine_rxn, SP_0749 & SP_0750 & SP_0751 & SP_0752 & SP_0753) phosphate_rxn= Reaction(name="phosphate_rxn", reactants=e(diphosphate) + H20,
from CellScribe import * from compartments import e from metabolites import atp, adp, phosphate from genes import SP_1860, SP_1861 choline_rxn = Reaction(name="choline_rxn", reactants=e(choline) + atp, products=choline + adp + phosphate) GeneAssociation(choline_rxn, SP_1860 & SP_1861) choline = Metabolite("choline", kegg="C00114") choline_rxn = Reaction(name="choline", reactants=e(choline) + atp, products=choline + adp + phosphate, pairs=[(e(choline), choline)]) GeneAssociation(choline_rxn, SP_1860 & SP_1861)
from CellScribe import * from compartments import e, c from metabolites import * from genes import SP_2108, SP_2109, SP_2110, SP_2108, SP_2109, SP_2110 from operons import malMP βmaltose_transport = Reaction(name="βmaltose_transport", reactants=e(βmaltose) + H20+ atp, products=βmaltose + adp + phosphate, pairs=[(atp, adp)], minors=[atp, adp]) GeneAssociation(βmaltose_transport, SP_2108 & SP_2109 & SP_2110) maltodextrin_transport = Reaction(name="maltodextrin_transport", reactants=e(maltodextrin) + H20+ atp, products=maltodextrin + adp + phosphate, pairs=[(atp, adp)], minors=[atp, adp]) <<<<<<< HEAD GeneAssociation(maltodextrin_transport, SP_2108 & SP_2109 & SP_2110) ======= maltodextrin_GA = GeneAssociation(maltodextrin, SP_2108 & SP_2109 & SP_2110) # In the absence of maltose, malR binds to the DNA between these two divergent operons to repress them If (malR & ~maltose, ~malXCD) If (malR & ~maltose, ~malMP)
from CellScribe import * from compartments import e, c from metabolites import * from genes import SP_1527, SP_1891, SP_0366, SP_1887, SP_1888, SP_1889, SP_1890 oligopeptide = Metabolite("oligopeptide", kegg="C00098") oligopeptide_rxn = Reaction(name="oligopeptide_rxn", reactants=e(oligopeptide) + H20 + atp, products=oligopeptide + adp + phosphate) GeneAssociation( oligopeptide_rxn, SP_1527 or SP_1891 or SP_0366 or SP_1887 or SP_1888 or SP_1889 or SP_1890)
from CellScribe import * from compartments import e from metabolites import * from genes import SP_0452, SP_0453, SP_1034, SP_1035, SP_0609, SP_0607, SP_0608, SP_0610, SP_0749, \ SP_0750, SP_0751, SP_0752, SP_0753, SP_1396, SP_1397, SP_1398, SP_1399, SP_1400 l_lysine_rxn = Reaction(name="l_lysine_rxn", reactants=e(l_lysine) + h2o + atp, products=l_lysine + adp + phosphate, pairs=[(atp, adp)], minors=[atp, adp]) GeneAssociation(l_lysine_rxn, SP_0452 & SP_0453) l_glutamate_rxn = Reaction(name="l-glutamate_rxn", reactants=e(l_glutamate) + h2o + atp, products=l_glutamate + adp + phosphate) GeneAssociation(l_glutamate_rxn, SP_0609 & SP_0607 & SP_0608 & SP_0610) l_valine_rxn = Reaction(name="l_valine_rxn", reactants=e(l_valine) + h2o + atp, products=l_valine + adp + phosphate, pairs=[(e(l_valine), l_valine)]) GeneAssociation(l_valine_rxn, SP_0749 & SP_0750 & SP_0751 & SP_0752 & SP_0753) phosphate_rxn = Reaction(name="phosphate_rxn",