def experiment(n,
iterations,
X_testing,
Y_testing,
X_training,
Y_training,
center='ac',
sample=1,
M=None):
config.reset()
testing = 3
matrix_of_weights = weights_matrix(n,
iterations,
X_training,
Y_training,
center=center,
sample=sample,
M=M)
matrix_of_accuracies = []
for weights in matrix_of_weights:
accuracies = []
for weight in weights:
accuracy = compute_accuracy(weight, X_testing, Y_testing)
accuracies.append(accuracy)
matrix_of_accuracies.append(accuracies)
matrix_of_accuracies = np.array(matrix_of_accuracies)
sum_of_accuracies = matrix_of_accuracies.sum(axis=0)
average_accuracies = sum_of_accuracies / n
return average_accuracies
def UpdateSettings(self, handler, query):
config.reset()
for section in ['Server', '_tivo_SD', '_tivo_HD', '_tivo_4K']:
self.each_section(query, section, section)
sections = query['Section_Map'][0].split(']')[:-1]
for section in sections:
ID, name = section.split('|')
if query[ID][0] == 'Delete_Me':
config.config.remove_section(name)
continue
if query[ID][0] != name:
config.config.remove_section(name)
config.config.add_section(query[ID][0])
self.each_section(query, ID, query[ID][0])
if query['new_Section'][0] != ' ':
config.config.add_section(query['new_Section'][0])
config.write()
if getattr(sys, 'frozen', False):
if sys.platform == "win32":
tivomak_path = os.path.join(os.path.dirname(sys.executable),
'dshow', 'tivomak')
tmakcmd = [
tivomak_path, '-set',
config.config.get('Server', 'tivo_mak')
]
subprocess.Popen(tmakcmd, shell=True)
handler.redir(SETTINGS_MSG, 5)
def Settings(self, handler, query):
# Read config file new each time in case there was any outside edits
config.reset()
shares_data = []
for section in config.config.sections():
if not section.startswith(('_tivo_', 'Server')):
if (not (config.config.has_option(section, 'type')) or
config.config.get(section, 'type').lower() not in
['settings', 'togo']):
shares_data.append((section,
dict(config.config.items(section,
raw=True))))
t = Template(SETTINGS_TEMPLATE, filter=EncodeUnicode)
t.mode = buildhelp.mode
t.options = buildhelp.options
t.container = handler.cname
t.quote = quote
t.server_data = dict(config.config.items('Server', raw=True))
t.server_known = buildhelp.getknown('server')
t.hd_tivos_data = dict(config.config.items('_tivo_HD', raw=True))
t.hd_tivos_known = buildhelp.getknown('hd_tivos')
t.sd_tivos_data = dict(config.config.items('_tivo_SD', raw=True))
t.sd_tivos_known = buildhelp.getknown('sd_tivos')
t.shares_data = shares_data
t.shares_known = buildhelp.getknown('shares')
t.tivos_data = [(section, dict(config.config.items(section, raw=True)))
for section in config.config.sections()
if section.startswith('_tivo_')
and not section.startswith(('_tivo_SD', '_tivo_HD'))]
t.tivos_known = buildhelp.getknown('tivos')
t.help_list = buildhelp.gethelp()
t.has_shutdown = hasattr(handler.server, 'shutdown')
handler.send_html(str(t))
def test_set_methods(self):
""" this tests all of the set methods since they need to work together """
save_config_file = config.ConfigObject.CONFIG_FILE
# Test the default with no file is 'unittest'
config.reset()
config.ConfigObject.CONFIG_FILE = 'badfile.xxx'
self.assertEqual(config.get_environment(), 'unittest')
config.ConfigObject.CONFIG_FILE = save_config_file
# test that if we the database name we have an unknown environmentwe
config.reset()
config.set_database_name(':memory:')
self.assertEqual(config.get_environment(), '????')
# test that if we the database name we have an unknown environment
config.reset()
config.set_enviornment('test')
self.assertTrue(config.get_database_name())
# test that we have an instance and database
config.reset()
self.assertTrue(config.get_environment(
)) # All these values must be set... Can't test to what though
self.assertTrue(config.get_database_name())
self.assertTrue(config.get_database_instance())
self.assertTrue(config.get_database())
# test that the default pdf location is the temp directory
config.reset()
self.assertTrue(config.get_pdf_location())
self.assertEqual(config.get_pdf_location(), config.get_temp_dir())
def playAudio(path):
conf.reset()
if not xxx2wav(path):
return
wf = wave.open(path, 'rb')
stream = conf.audio_player.open(
format=conf.audio_player.get_format_from_width(wf.getsampwidth()),
channels=wf.getnchannels(),
rate=wf.getframerate(),
output=True)
try:
print('Start Playing.')
conf.isPlaying = True
data = wf.readframes(conf.chunk)
while data != b'':
stream.write(data)
data = wf.readframes(conf.chunk)
# User interrupted
while conf.Interrupted:
time.sleep(1)
# stop playing
if conf.Stopped:
break
if conf.VOL_UP:
conf.increaseVolume()
elif conf.VOL_DOWN:
conf.decreaseVolume()
except KeyboardInterrupt:
pass
finally:
stream.close()
conf.audio_player.terminate()
initializer.init_audio()
def signup():
config.reset(settingdb.select())
config.kargs['blogTitle'] = "ទំព័រសមាជិក"
config.kargs['posts'] = userdb.select(config.kargs['dashboardPostLimit'])
config.kargs['thumbs'] = lib.getPostThumbs(config.kargs['posts'],
type="user")
config.kargs['page'] = 1
return template('dashboard/signup', data=config.kargs)
def search(place):
config.reset(settingdb.select())
query = request.forms.getunicode('fquery')
config.kargs['posts'] = postdb.search(query)
config.kargs['thumbs'] = lib.getPostThumbs(config.kargs['posts'])
config.kargs['blogTitle'] = "ទំព័រស្វែងរក"
if place == "backend":
return template('dashboard/search', data=config.kargs)
else:
return template('search', data=config.kargs)
def post(id):
config.reset(settingdb.select())
config.kargs['blogTitle'] = "ទំព័រស្តាទិក"
config.kargs['post'] = pagedb.select(1, id)
config.kargs['posts'] = pagedb.select(config.kargs['frontPagePostLimit'])
config.kargs['thumbs'] = lib.getPostThumbs(config.kargs['posts'])
config.kargs['page'] = 1
author = request.get_cookie("logged-in", secret=config.kargs['secretKey'])
if author:
config.kargs['showEdit'] = True
return template('page', data=config.kargs)
def UpdateSettings(self, handler, query):
config.reset()
for section in ['Server', '_tivo_SD', '_tivo_HD']:
new_setting = new_value = ' '
for key in query:
if key.startswith('opts.'):
data = query[key]
del query[key]
key = key[5:]
query[key] = data
if key.startswith(section + '.'):
_, option = key.split('.')
if not config.config.has_section(section):
config.config.add_section(section)
if option == 'new__setting':
new_setting = query[key][0]
elif option == 'new__value':
new_value = query[key][0]
elif query[key][0] == ' ':
config.config.remove_option(section, option)
else:
config.config.set(section, option, query[key][0])
if not (new_setting == ' ' and new_value == ' '):
config.config.set(section, new_setting, new_value)
sections = query['Section_Map'][0].split(']')
sections.pop() # last item is junk
for section in sections:
ID, name = section.split('|')
if query[ID][0] == 'Delete_Me':
config.config.remove_section(name)
continue
if query[ID][0] != name:
config.config.remove_section(name)
config.config.add_section(query[ID][0])
for key in query:
if key.startswith(ID + '.'):
_, option = key.split('.')
if option == 'new__setting':
new_setting = query[key][0]
elif option == 'new__value':
new_value = query[key][0]
elif query[key][0] == ' ':
config.config.remove_option(query[ID][0], option)
else:
config.config.set(query[ID][0], option, query[key][0])
if not (new_setting == ' ' and new_value == ' '):
config.config.set(query[ID][0], new_setting, new_value)
if query['new_Section'][0] != ' ':
config.config.add_section(query['new_Section'][0])
config.write()
handler.redir(SETTINGS_MSG, 5)
def post(name):
config.reset(settingdb.select())
config.kargs['blogTitle'] = "ទំព័រសមាជិក"
config.kargs['post'] = userdb.select(1, author=name)
config.kargs['posts'] = userdb.select(config.kargs['authorPagePostLimit'])
config.kargs['thumbs'] = lib.getPostThumbs(config.kargs['posts'], "user")
config.kargs['page'] = 1
author = request.get_cookie("logged-in", secret=config.kargs['secretKey'])
if author:
config.kargs['showEdit'] = True
return template('user', data=config.kargs)
def UpdateSettings(self, handler, query):
config.reset()
for section in ['Server', '_tivo_SD', '_tivo_HD']:
new_setting = new_value = ' '
for key in query:
if key.startswith('opts.'):
data = query[key]
del query[key]
key = key[5:]
query[key] = data
if key.startswith(section + '.'):
_, option = key.split('.')
if not config.config.has_section(section):
config.config.add_section(section)
if option == 'new__setting':
new_setting = query[key][0]
elif option == 'new__value':
new_value = query[key][0]
elif query[key][0] == ' ':
config.config.remove_option(section, option)
else:
config.config.set(section, option, query[key][0])
if not(new_setting == ' ' and new_value == ' '):
config.config.set(section, new_setting, new_value)
sections = query['Section_Map'][0].split(']')
sections.pop() # last item is junk
for section in sections:
ID, name = section.split('|')
if query[ID][0] == 'Delete_Me':
config.config.remove_section(name)
continue
if query[ID][0] != name:
config.config.remove_section(name)
config.config.add_section(query[ID][0])
for key in query:
if key.startswith(ID + '.'):
_, option = key.split('.')
if option == 'new__setting':
new_setting = query[key][0]
elif option == 'new__value':
new_value = query[key][0]
elif query[key][0] == ' ':
config.config.remove_option(query[ID][0], option)
else:
config.config.set(query[ID][0], option, query[key][0])
if not(new_setting == ' ' and new_value == ' '):
config.config.set(query[ID][0], new_setting, new_value)
if query['new_Section'][0] != ' ':
config.config.add_section(query['new_Section'][0])
config.write()
handler.redir(SETTINGS_MSG, 5)
def category(name):
config.reset(settingdb.select())
config.kargs['blogTitle'] = "ទំព័រជំពូក"
config.kargs['category'] = name
config.kargs['posts'] = postdb.select(config.kargs['categoryPostLimit'], category=name)
config.kargs['thumbs'] = lib.getPostThumbs(config.kargs['posts'])
config.kargs['page'] = 1
author = request.get_cookie("logged-in", secret=config.kargs['secretKey'])
if author:
config.kargs['showEdit'] = True
return template('categories', data=config.kargs)
def _select_next_parameter(self):
"""Select the next parameter that should be tuned (and its predefined values).
If no more parameters are available, hyper tuning will be disabled.
"""
# reset all possible changes caused by the last parameter
self._curr_value_index = 0
cf.reset()
if len(self._parameter_selection) > 0:
self._current_parameter = self._parameter_selection.pop(0)
else:
self.finalize()
def post():
config.reset(settingdb.select())
config.kargs['blogTitle'] = "ទំព័រជំពូក"
config.kargs['posts'] = categorydb.select(config.kargs['dashboardPostLimit'])
config.kargs['thumbs'] = lib.getPostThumbs(config.kargs['posts'])
config.kargs['datetime'] = getTimeZone()
config.kargs['page'] = 1
author = request.get_cookie("logged-in", secret=config.kargs['secretKey'])
if author:
config.kargs['author'] = author
config.kargs['showEdit'] = True
return template('dashboard/category', data=config.kargs)
def test_set_methods(self):
""" this tests all of the set methods since they need to work together """
save_config_file = config.ConfigObject.CONFIG_FILE
# Test the default with no file is 'unittest'
config.reset()
config.ConfigObject.CONFIG_FILE = 'badfile.xxx'
self.assertEqual(config.get_environment(), 'unittest')
config.ConfigObject.CONFIG_FILE = save_config_file
# test that if we the database name we have an unknown environmentwe
config.reset()
config.set_database_name(':memory:')
self.assertEqual(config.get_environment(), '????')
# test that if we the database name we have an unknown environmentwe
config.reset()
config.set_enviornment('test')
self.assertTrue(config.get_database_name())
# test that we have an instance and database
config.reset()
self.assertTrue(config.get_environment()) # All these values must be set... Can't test to what though
self.assertTrue(config.get_database_name())
self.assertTrue(config.get_database_instance())
self.assertTrue(config.get_database())
def edit(id):
author = request.get_cookie("logged-in", secret=config.kargs['secretKey'])
if ((author != "Guest") and categorydb.check(author)):
config.reset(settingdb.select())
config.kargs['blogTitle'] = "ទំព័រកែតំរូវ"
config.kargs['posts'] = categorydb.select(config.kargs['dashboardPostLimit'])
config.kargs['thumbs'] = lib.getPostThumbs(config.kargs['posts'])
config.kargs['post'] = categorydb.select(1, id)
config.kargs['edit'] = True
config.kargs['postId'] = id
config.kargs['page'] = 1
return template('dashboard/category', data=config.kargs)
redirect('/category')
def Settings(self, handler, query):
# Read config file new each time in case there was any outside edits
config.reset()
shares_data = []
for section in config.config.sections():
if not (section.startswith('_tivo_')
or section.startswith('Server')):
if (not (config.config.has_option(section, 'type')) or
config.config.get(section, 'type').lower() not in
['settings', 'togo']):
shares_data.append((section,
dict(config.config.items(section,
raw=True))))
cname = query['Container'][0].split('/')[0]
t = Template(SETTINGS_TEMPLATE, filter=EncodeUnicode)
t.container = cname
t.quote = quote
t.server_data = dict(config.config.items('Server', raw=True))
t.server_known = buildhelp.getknown('server')
if config.config.has_section('_tivo_HD'):
t.hd_tivos_data = dict(config.config.items('_tivo_HD', raw=True))
else:
t.hd_tivos_data = {}
t.hd_tivos_known = buildhelp.getknown('hd_tivos')
if config.config.has_section('_tivo_SD'):
t.sd_tivos_data = dict(config.config.items('_tivo_SD', raw=True))
else:
t.sd_tivos_data = {}
t.sd_tivos_known = buildhelp.getknown('sd_tivos')
t.shares_data = shares_data
t.shares_known = buildhelp.getknown('shares')
t.tivos_data = [(section, dict(config.config.items(section, raw=True)))
for section in config.config.sections()
if section.startswith('_tivo_')
and not section.startswith('_tivo_SD')
and not section.startswith('_tivo_HD')]
t.tivos_known = buildhelp.getknown('tivos')
t.help_list = buildhelp.gethelp()
t.has_shutdown = hasattr(handler.server, 'shutdown')
handler.send_response(200)
handler.send_header('Content-Type', 'text/html; charset=utf-8')
handler.send_header('Expires', '0')
handler.end_headers()
handler.wfile.write(t)
def login():
user = userdb.createTable()
username = request.get_cookie("logged-in",
secret=config.kargs['secretKey'])
if not user:
return template('dashboard/signup', data=config.kargs)
elif username:
config.reset(settingdb.select())
config.kargs['author'] = username
config.kargs['blogTitle'] = "ទំព័រគ្រប់គ្រង"
config.kargs['datetime'] = getTimeZone()
config.kargs['posts'] = postdb.select(
config.kargs['dashboardPostLimit'])
config.kargs['categories'] = categorydb.select(amount="all")
config.kargs['thumbs'] = lib.getPostThumbs(config.kargs['posts'])
config.kargs['page'] = 1
return template('dashboard/home', data=config.kargs)
else:
return template('login', data=config.kargs)
def experiment(n, iterations, X_testing, Y_testing, X_training, Y_training,
center='ac', sample = 1, M=None):
config.reset()
testing=3
matrix_of_weights = weights_matrix(n, iterations, X_training, Y_training,
center=center, sample=sample, M=M)
matrix_of_accuracies = []
for weights in matrix_of_weights:
accuracies = []
for weight in weights:
accuracy = compute_accuracy(weight, X_testing, Y_testing)
accuracies.append(accuracy)
matrix_of_accuracies.append(accuracies)
matrix_of_accuracies = np.array(matrix_of_accuracies)
sum_of_accuracies = matrix_of_accuracies.sum(axis=0)
average_accuracies = sum_of_accuracies/n
return average_accuracies
def UpdateSettings(self, handler, query):
config.reset()
for section in ['Server', '_tivo_SD', '_tivo_HD', '_tivo_4K']:
self.each_section(query, section, section)
sections = query['Section_Map'][0].split(']')[:-1]
for section in sections:
ID, name = section.split('|')
if query[ID][0] == 'Delete_Me':
config.config.remove_section(name)
continue
if query[ID][0] != name:
config.config.remove_section(name)
config.config.add_section(query[ID][0])
self.each_section(query, ID, query[ID][0])
if query['new_Section'][0] != ' ':
config.config.add_section(query['new_Section'][0])
config.write()
handler.redir(SETTINGS_MSG, 5)
def UpdateSettings(self, handler, query):
config.reset()
for section in ['Server', '_tivo_SD', '_tivo_HD']:
self.each_section(query, section, section)
sections = query['Section_Map'][0].split(']')[:-1]
for section in sections:
ID, name = section.split('|')
if query[ID][0] == 'Delete_Me':
config.config.remove_section(name)
continue
if query[ID][0] != name:
config.config.remove_section(name)
config.config.add_section(query[ID][0])
self.each_section(query, ID, query[ID][0])
if query['new_Section'][0] != ' ':
config.config.add_section(query['new_Section'][0])
config.write()
handler.redir(SETTINGS_MSG, 5)
def Reset(self, handler, query):
config.reset()
handler.server.reset()
if 'last_page' in query:
last_page = query['last_page'][0]
else:
last_page = 'Admin'
subcname = query['Container'][0]
cname = subcname.split('/')[0]
handler.send_response(200)
handler.end_headers()
t = Template(file=os.path.join(SCRIPTDIR,'templates', 'redirect.tmpl'))
t.container = cname
t.time = '3'
t.url = '/TiVoConnect?Command='+ last_page +'&Container=' + cname
t.text = '<h3>The pyTivo Server has been soft reset.</h3> <br>pyTivo has reloaded the pyTivo.conf'+\
'file and all changed should now be in effect. <br> The'+ \
'<a href="/TiVoConnect?Command='+ last_page +'&Container='+ cname +'"> previous</a> page will reload in 3 seconds.'
handler.wfile.write(t)
debug.debug_write(__name__, debug.fn_attr(), ['The pyTivo Server has been soft reset.'])
debug.print_conf(__name__, debug.fn_attr())
def Reset(self, handler, query):
config.reset()
handler.server.reset()
if 'last_page' in query:
last_page = query['last_page'][0]
else:
last_page = 'Admin'
subcname = query['Container'][0]
cname = subcname.split('/')[0]
handler.send_response(200)
handler.end_headers()
t = Template(
file=os.path.join(SCRIPTDIR, 'templates', 'redirect.tmpl'))
t.container = cname
t.time = '3'
t.url = '/TiVoConnect?Command=' + last_page + '&Container=' + cname
t.text = '<h3>The pyTivo Server has been soft reset.</h3> <br>pyTivo has reloaded the pyTivo.conf'+\
'file and all changed should now be in effect. <br> The'+ \
'<a href="/TiVoConnect?Command='+ last_page +'&Container='+ cname +'"> previous</a> page will reload in 3 seconds.'
handler.wfile.write(t)
debug.debug_write(__name__, debug.fn_attr(),
['The pyTivo Server has been soft reset.'])
debug.print_conf(__name__, debug.fn_attr())
def check_passcd():
GPIO.setmode(GPIO.BCM)
GPIO.setwarnings(False)
for j in range(3):
GPIO.setup(Col[j], GPIO.OUT)
GPIO.output(Col[j], 1)
for i in range(4):
GPIO.setup(Row[i], GPIO.IN, pull_up_down=GPIO.PUD_UP)
enter = []
star_list = []
while True:
time.sleep(0.2)
for j in range(3):
GPIO.output(Col[j], 0)
for i in range(4):
if (not GPIO.input(Row[i])):
if (Matrix[i][j] != '#'):
enter.append(Matrix[i][j])
if len(star_list) == 0:
star_list.append(Matrix[i][j])
else:
star_list[len(star_list) - 1] = '*'
star_list.append(Matrix[i][j])
print(star_list)
show_digit(star_list)
else:
print "enter"
print(enter)
passcode = config.reset()
print "passcode"
print(passcode)
print "Passcode matched?"
print(enter == passcode)
return (enter == passcode)
while (not GPIO.input(Row[i])):
pass
GPIO.output(Col[j], 1)
return False
def Reset(self, handler, query):
config.reset()
handler.server.reset()
handler.redir(RESET_MSG, 3)
logging.getLogger('pyTivo.settings').info('pyTivo has been soft reset.')
def resetconf(params):
config.reset()
return True, {"result" : "success"}
def Reset(self, handler, query):
config.reset()
handler.server.reset()
handler.redir(RESET_MSG, 3)
logging.getLogger('pyTivo.settings').info('pyTivo has been soft reset.')
def do_reset(self, context):
"usage: reset"
config.reset()
def run():
print("[Hiperwalk] Test mode!")
cfg.TEST_MODE = 1
devnull = open(os.devnull, 'w')
orig_out = sys.stdout
io.test_mode()
writeInputs_TEST()
returnValue = 1
sys.stdout = devnull
returnValue = subprocess.call(["neblina", "-l"],
stdout=devnull,
stderr=devnull)
sys.stdout = orig_out
if not returnValue:
print("[Hiperwalk] Neblina installed.")
else:
print("[Hiperwalk] Neblina failed to execute.")
exit(-1)
cfg.reset()
inputFile = str(os.path.abspath("coined1D_test.in"))
sys.stdout = devnull
returnValue = walks.walk(inputFile)
sys.stdout = orig_out
if returnValue:
print("[Hiperwalk] DTQW on the line OK.")
else:
print("[Hiperwalk] DTQW on the line failed.")
cfg.reset()
inputFile = str(os.path.abspath("coined2D_test.in"))
sys.stdout = devnull
returnValue = walks.walk(inputFile)
sys.stdout = orig_out
if returnValue:
print("[Hiperwalk] DTQW on the lattice OK.")
else:
print("[Hiperwalk] DTQW on the lattice failed.")
cfg.reset()
inputFile = str(os.path.abspath("staggered1D_test.in"))
sys.stdout = devnull
returnValue = walks.walk(inputFile)
sys.stdout = orig_out
if returnValue:
print("[Hiperwalk] STAGGERED on the line OK.")
else:
print("[Hiperwalk] STAGGERED on the line failed.")
cfg.reset()
inputFile = str(os.path.abspath("staggered2D_test.in"))
sys.stdout = devnull
returnValue = walks.walk(inputFile)
sys.stdout = orig_out
if returnValue:
print("[Hiperwalk] STAGGERED on the lattice OK.")
else:
print("[Hiperwalk] STAGGERED on the lattice failed.")
cfg.reset()
inputFile = str(os.path.abspath("custom_test.in"))
sys.stdout = devnull
returnValue = walks.walk(inputFile)
sys.stdout = orig_out
if returnValue:
print("[Hiperwalk] CUSTOM WALK OK.")
else:
print("[Hiperwalk] CUSTOM WALK failed.")
io.remnove_test_mode_folder()
# print("[Hiperwalk] Files stored at %s/HIPERWALK_TEST_DIRECTORY"%(os.environ['HOME']))
def GetSettings(self, handler, query):
# Read config file new each time in case there was any outside edits
config.reset()
shares_data = []
for section in config.config.sections():
if not section.startswith(('_tivo_', 'Server')):
if (not (config.config.has_option(section, 'type'))
or config.config.get(section, 'type').lower()
not in ['settings', 'togo']):
shares_data.append(
(section, dict(config.config.items(section,
raw=True))))
json_config = {}
json_config['Server'] = {}
json_config['TiVos'] = {}
json_config['Shares'] = {}
for section in config.config.sections():
if section == 'Server':
for name, value in config.config.items(section):
if name in {
'debug', 'nosettings', 'togo_save_txt',
'togo_decode', 'togo_sortable_names',
'tivolibre_upload', 'beta_tester', 'vrd_prompt',
'vrd_decrypt_qsf', 'vrd_delete_on_success'
}:
try:
json_config['Server'][
name] = config.config.getboolean(
section, name)
except ValueError:
json_config['Server'][name] = value
else:
json_config['Server'][name] = value
else:
if section.startswith('_tivo_'):
json_config['TiVos'][section] = {}
for name, value in config.config.items(section):
if name in {'optres'}:
try:
json_config['TiVos'][section][
name] = config.config.getboolean(
section, name)
except ValueError:
json_config['TiVos'][section][name] = value
else:
json_config['TiVos'][section][name] = value
else:
if (not (config.config.has_option(section, 'type'))
or config.config.get(section, 'type').lower()
not in ['settings', 'togo']):
json_config['Shares'][section] = {}
for name, value in config.config.items(section):
if name in {'force_alpha', 'force_ffmpeg'}:
try:
json_config['Shares'][section][
name] = config.config.getboolean(
section, name)
except ValueError:
json_config['Shares'][section][
name] = value
else:
json_config['Shares'][section][name] = value
handler.send_json(json.dumps(json_config))
def reset(): config.reset(config.pref_path())
def do_reset(self, context):
"usage: reset"
config.reset()
def penetrance(pars,logger=None):
"""
Given a simuPOP population, the relative risk (additive), the wild-type risk, and the number and cases and controls, build a case-control dataset in simuPOP format.
DPL must be a list, even if there is only one locus.
"""
#DPL=["rs4491689", "rs2619939"]
reppop = pars.pop.clone()
loci = reppop.lociByNames(pars.DPL)
#Set risks
het_risk = pars.wtr*pars.GRR
if pars.GRR > 1:
hom_mut_risk = pars.wtr*pars.GRR*2
else:
hom_mut_risk = pars.wtr
config.risks = [pars.wtr,het_risk,hom_mut_risk]
config.numCases = pars.numCases
config.numControls = pars.numControls
reppop.evolve(
matingScheme=RandomMating(
ops=[
MendelianGenoTransmitter(),
# an individual will be discarded if _selectInds returns False
PyOperator(func=_selectInds, param=loci)
],
subPopSize=config.numCases + config.numControls
),
gen = 1
)
if logger:
logger.info("Number of Wild Type Cases: %d" %config.NUM_WT_CASES)
logger.info("Number of Mutant Controls: %d" %config.NUM_MUT_CONTROLS)
config.SELECTED_CASE,config.SELECTED_CONTROL,config.DISCARDED_INDS,config.NUM_WT_CASES,config.NUM_MUT_CONTROLS = config.reset()
return reppop
def main(reset=False):
if reset:
config.reset()
sys.exit()
def main():
config.reset(settingdb.select())
config.kargs['posts'] = postdb.select(config.kargs['homePagePostLimit'])
config.kargs['thumbs'] = lib.getPostThumbs(config.kargs['posts'])
config.kargs['page'] = 1
return template('home', data=config.kargs)
