def main():
parser = argparse.ArgumentParser()
parser.add_argument('--config', dest='config',
help="parallyze config file", default='parallyze.conf')
parser.add_argument('--procedure', dest='procedure',
default='mutationTally', choices=['simulationRM',
'simulationEJB', 'dNdS', 'mutationTally', 'infoRegion',
'analyticalEJB'])
parser.add_argument('--nonsynonymous', action='store_true')
parser.add_argument('--synonymous', action='store_true')
parser.add_argument('--noncoding', action='store_true')
parser.add_argument('--pseudogene', action='store_true')
parser.add_argument('--intergenic', action='store_true')
parser.add_argument('--replicates', type=int)
parser.add_argument('--genes_to_display', type=int)
parser.add_argument('--fname')
parser.add_argument('--gene_product', action='store_true')
args = parser.parse_args()
# print args.fname
conf = SimpleConfig(config_keys, args.config)
for fn in conf.GENOMEDIFF_FILES:
assert os.path.isfile(fn)
'''
The user can override most of the options in config file
with (optional) flags at runtime.
'''
if args.nonsynonymous:
conf.NONSYNONYMOUS = True
if args.synonymous:
conf.SYNONYMOUS = True
if args.noncoding:
conf.NONCODING = True
if args.pseudogene:
conf.PSEUDOGENE = True
if args.intergenic:
conf.INTERGENIC = True
if args.gene_product:
conf.GENE_PRODUCT = True
if args.replicates and args.replicates > 0:
conf.REPLICATES = args.replicates
if args.genes_to_display and args.genes_to_display >= 0:
conf.GENES_TO_DISPLAY = args.genes_to_display
'''
Store the set of mutation types to use, for later reference
in the program.
'''
conf.snp_types = set()
if conf.NONSYNONYMOUS:
conf.snp_types.add('nonsynonymous')
if conf.SYNONYMOUS:
conf.snp_types.add('synonymous')
if conf.NONCODING:
conf.snp_types.add('noncoding')
if conf.PSEUDOGENE:
conf.snp_types.add('pseudogene')
if conf.INTERGENIC:
conf.snp_types.add('intergenic')
if args.procedure == 'simulationRM':
simulationRM(conf)
elif args.procedure == 'simulationEJB':
simulationEJB(conf)
elif args.procedure == 3:
proc3(conf)
elif args.procedure == 'dNdS':
dNdS(conf)
elif args.procedure == 'analyticalEJB':
analyticalEJB(conf)
elif args.procedure == 'mutationTally':
mutationTally(conf, args)
elif args.procedure == 'infoRegion':
infoRegion(conf)
config.batch_size, config.history_length, config.screen_height, config.screen_width
self.history = np.zeros([self.history_length, self.screen_height, self.screen_width], dtype = np.float32)
def add(self, screen):
assert type(screen) is np.ndarray, "screen is not numpy.ndarray"
assert screen.shape == (self.screen_height, self.screen_width), "%s != (%d, %d)" % (str(screen.shape), self.screen_height, self.screen_width)
self.history[:-1] = self.history[1:]
self.history[-1] = screen
def get(self):
return np.transpose(self.history, (1, 2, 0))
if __name__ == "__main__":
config = SimpleConfig()
env = SimpleGymEnvironment(config)
env.new_game()
history = History(config)
for _ in range(10):
screen, reward, terminal = env.act(0)
history.add(screen)
print history.get()
# _*_ coding: utf-8 _*_
__author__='fang'
import socket,re
from config import SimpleConfig
from httpProxy import ProxyHandler,serving,ThreadingHTTPServer
from filter import SQLFilter
if __name__=='__main__':
try:
#获取proxy的配置,返回一个dict
#获取黑名单,返回一个list
#获取过滤规则,返回一个list
confile=SimpleConfig('proxy.cnf').config_proxy()
refuseClients=SimpleConfig('blacklist.db').config_blacklist()
filterPatterns=SimpleConfig('filterPattern.cnf').config_filter()
#初始化SQLFilter的过滤规则
patterns=[]
for item in filterPatterns:
pattern=re.compile(item)
patterns.append(pattern)
SQLFilter.patterns=patterns
#初始化黑名单
refuse=[]
for c in refuseClients:
client=socket.gethostbyname(c)
refuse.append(client)