def connectToOpenClinica(self):
"""Connection to OpenClinica SOAP web services
"""
if (OCUserDetails().connected != True):
QtGui.QMessageBox.warning(self, "Error", "Cannot connect to OpenClinica SOAP services!")
else:
return True
def handleLogin(self):
"""Send authenticate user message to site server
"""
username = str(self.txtUsername.text())
password = str(self.txtPassword.text())
passwordHash = hashlib.sha1(password).hexdigest()
# Create connection artefact to users main OpenClinica SOAP
ocConnectInfo = OCConnectInfo(ConfigDetails().ocWsHost, username)
ocConnectInfo.setPasswordHash(passwordHash)
if ConfigDetails().proxyEnabled:
ocWebServices = OCWebServices(ocConnectInfo,
ConfigDetails().proxyHost,
ConfigDetails().proxyPort,
ConfigDetails().noProxy,
ConfigDetails().proxyAuthLogin,
ConfigDetails().proxyAuthPassword)
else:
ocWebServices = OCWebServices(ocConnectInfo)
successfull = False
try:
successfull, studies = ocWebServices.listAllStudies()
except:
QtGui.QMessageBox.warning(
self, "Error",
"Cannot communicate with the server, no network connection or the server is not running."
)
if (successfull):
OCUserDetails().username = username
OCUserDetails().passwordHash = passwordHash
OCUserDetails().connected = True
UserDetails().username = username
UserDetails().clearpass = password
UserDetails().password = passwordHash
self.accept()
else:
QtGui.QMessageBox.warning(self, 'Error',
'Wrong username or password.')
def prepareServices(self):
"""Prepare services for this module
"""
# HTTP connection to RadPlanBio server (Database)
self._svcHttp = HttpConnectionService(ConfigDetails().rpbHost,
ConfigDetails().rpbHostPort,
UserDetails())
self._svcHttp.application = ConfigDetails().rpbApplication
if ConfigDetails().proxyEnabled:
self._svcHttp.setupProxy(ConfigDetails().proxyHost,
ConfigDetails().proxyPort,
ConfigDetails().noProxy)
if ConfigDetails().proxyAuthEnabled:
self._svcHttp.setupProxyAuth(ConfigDetails().proxyAuthLogin,
ConfigDetails().proxyAuthPassword)
# Read partner site of logged user
self._mySite = self._svcHttp.getMyDefaultAccount().partnersite
# Create connection artefact to users main OpenClinica SOAP
baseUrl = self._mySite.edc.soapbaseurl
self.ocConnectInfo = OCConnectInfo(baseUrl, OCUserDetails().username)
self.ocConnectInfo.setPasswordHash(OCUserDetails().passwordHash)
if ConfigDetails().proxyEnabled:
self.ocWebServices = OCWebServices(
self.ocConnectInfo,
ConfigDetails().proxyHost,
ConfigDetails().proxyPort,
ConfigDetails().noProxy,
ConfigDetails().proxyAuthLogin,
ConfigDetails().proxyAuthPassword)
else:
self.ocWebServices = OCWebServices(self.ocConnectInfo)
# ODM XML metadata processing
self.fileMetaDataService = OdmFileDataService()
# DICOM PROCESSING SERVICE
self._svcDicom = DicomService()
def prepareServices(self):
"""Prepare services for this module
"""
# HTTP connection to RadPlanBio server (Database)
self.svcHttp = HttpConnectionService(ConfigDetails().ocHost, ConfigDetails().ocPort, UserDetails())
if ConfigDetails().proxyEnabled:
self.svcHttp.setupProxy(ConfigDetails().proxyHost, ConfigDetails().proxyPort, ConfigDetails().noProxy)
if ConfigDetails().proxyAuthEnabled:
self.svcHttp.setupProxyAuth(ConfigDetails().proxyAuthLogin, ConfigDetails().proxyAuthPassword)
# Create connection artefact to users main OpenClinica SOAP
self.ocConnectInfo = OCConnectInfo(ConfigDetails().ocWsHost, OCUserDetails().username)
self.ocConnectInfo.setPasswordHash(OCUserDetails().passwordHash)
if ConfigDetails().proxyEnabled:
self.ocWebServices = OCWebServices(self.ocConnectInfo, ConfigDetails().proxyHost, ConfigDetails().proxyPort, ConfigDetails().noProxy, ConfigDetails().proxyAuthLogin, ConfigDetails().proxyAuthPassword)
else:
self.ocWebServices = OCWebServices(self.ocConnectInfo)
# ODM XML metadata processing
self.svcOdm = OdmFileDataService()
def __init__(self, parent=None):
"""Constructor of DicomUploadModule
"""
# Setup GUI
QWidget.__init__(self, parent)
self.parent = parent
self.setupUi(self)
# Setup logger - use config file
self.logger = logging.getLogger(__name__)
logging.config.fileConfig('logging.ini',
disable_existing_loggers=False)
# List of worker threads
self._threadPool = []
# Initialise main data members
self._mySite = None
# Prepares services and main data for this ViewModel
self.prepareServices()
# Initialize data structures for UI
self._downloadDir = None
self._studies = []
self._studySubjects = []
# Initial data load
self.reloadData()
# Finish UI setup
self.lblOcConnection.setText("[" + OCUserDetails().username + "] " +
self._mySite.edc.soapbaseurl)
# Register handlers
self.btnDownload.clicked.connect(self.btnDownloadClicked)
self.cmbStudy.currentIndexChanged['QString'].connect(
self.cmbStudyChanged)
self.destroyed.connect(self.handleDestroyed)
def __init__(self, parent = None):
"""Default Constructor
"""
# Setup GUI
QWidget.__init__(self, parent)
self.parent = parent
self.setupUi(self)
# Hide summary of XML for importing data to OC (for user not necessary)
self.lblSummary.hide()
# Setup logger - use config file
self._logger = logging.getLogger(__name__)
logging.config.fileConfig("logging.ini", disable_existing_loggers=False)
# List of worker threads
self._threadPool = []
# Prepares services and main data for this ViewModel
self.prepareServices()
# Initialize data structures for UI
self._studies = []
self._studySubjects = []
self.reloadData()
# Finish UI setup
self.lblOcConnection.setText("[" + OCUserDetails().username + "] " + ConfigDetails().ocHost)
# Register handlers
self.btnReloadStudySubjects.clicked.connect(self.btnReloadStudySubjectsClicked)
self.btnNewStudySubject.clicked.connect(self.btnNewStudySubjectClicked)
self.btnNewEvent.clicked.connect(self.btnNewEventClicked)
self.btnUpload.clicked.connect(self.btnImportClicked)
self.cmbStudy.currentIndexChanged["QString"].connect(self.cmbStudyChanged)
self.destroyed.connect(self.handleDestroyed)
sys.path.insert(0, os.path.abspath("./../"))
# Contexts
from contexts.OCUserDetails import OCUserDetails
from contexts.ConfigDetails import ConfigDetails
from contexts.UserDetails import UserDetails
# Services
from rest.HttpConnectionService import HttpConnectionService
from soap.OCConnectInfo import OCConnectInfo
from soap.OCWebServices import OCWebServices
ocWsHost = "http://skripcak.net:8080/OpenClinica-ws"
password = "******"
OCUserDetails().username = "******"
OCUserDetails().connected = False
# Create connection artefact to users main OpenClinica SOAP
ocConnectInfo = OCConnectInfo(ocWsHost, OCUserDetails().username)
ocConnectInfo.setPassword(password)
# Initialise SOAP services
ocWebServices = OCWebServices(ocConnectInfo)
successfull = False
try:
successfull, studies = ocWebServices.listAllStudies()
except:
print "Cannot communicate with the server, no network connection or the server is not running."
import sys, os
sys.path.insert(0,os.path.abspath("./../"))
# Contexts
from contexts.OCUserDetails import OCUserDetails
# Services
from soap.OCConnectInfo import OCConnectInfo
from soap.OCWebServices import OCWebServices
ocWsHost = "http://skripcak.net:8080/OpenClinica-ws"
password = "******"
OCUserDetails().username = "******"
OCUserDetails().connected = False
# Create connection artefact to users main OpenClinica SOAP
ocConnectInfo = OCConnectInfo(
ocWsHost,
OCUserDetails().username
)
ocConnectInfo.setPassword(password)
# Initialise SOAP services
# Debug lvls ... trace=logging.INFO, trace=logging.DEBUG in OCWebServices constructor
ocWebServices = OCWebServices(ocConnectInfo)
successfull = False
try:
successfull, studies = ocWebServices.listAllStudies()
def __init__(self, parent=None):
"""Constructor of main application widnow
"""
QMainWindow.__init__(self, parent)
self._logger = logging.getLogger(__name__)
logging.config.fileConfig("logging.ini",
disable_existing_loggers=False)
self.setupUi(self)
self.statusBar.showMessage("Ready")
self._logger.info("RadPlanBio host: " + ConfigDetails().rpbHost + ":" +
str(ConfigDetails().rpbHostPort))
self._logger.info("Partner site proxy: " + ConfigDetails().proxyHost +
":" + str(ConfigDetails().proxyPort) + " [" +
str(ConfigDetails().proxyEnabled) + "]")
self.svcHttp = HttpConnectionService(ConfigDetails().rpbHost,
ConfigDetails().rpbHostPort,
UserDetails())
self.svcHttp.application = ConfigDetails().rpbApplication
if ConfigDetails().proxyEnabled:
self.svcHttp.setupProxy(ConfigDetails().proxyHost,
ConfigDetails().proxyPort,
ConfigDetails().noProxy)
if ConfigDetails().proxyAuthEnabled:
self.svcHttp.setupProxyAuth(ConfigDetails().proxyAuthLogin,
ConfigDetails().proxyAuthPassword)
self.lblRPBConnection.setText("[" + UserDetails().username + "]@" +
ConfigDetails().rpbHost + "/" +
ConfigDetails().rpbApplication + ":" +
str(ConfigDetails().rpbHostPort))
try:
defaultAccount = self.svcHttp.getMyDefaultAccount()
except Exception:
self._logger.info("HTTP communication failed.")
if defaultAccount.ocusername and defaultAccount.ocusername != "":
ocUsername = defaultAccount.ocusername
ocPasswordHash = self.svcHttp.getOCAccountPasswordHash()
ocSoapBaseUrl = defaultAccount.partnersite.edc.soapbaseurl
successful = False
try:
# Create connection artifact to OC
self.ocConnectInfo = OCConnectInfo(ocSoapBaseUrl, ocUsername)
self.ocConnectInfo.setPasswordHash(ocPasswordHash)
if ConfigDetails().proxyEnabled:
self.ocWebServices = OCWebServices(
self.ocConnectInfo,
ConfigDetails().proxyHost,
ConfigDetails().proxyPort,
ConfigDetails().noProxy,
ConfigDetails().proxyAuthLogin,
ConfigDetails().proxyAuthPassword)
else:
self.ocWebServices = OCWebServices(self.ocConnectInfo)
successful, studies = self.ocWebServices.listAllStudies()
except:
self._logger.info("HTTP OC communication failed.",
exc_info=True)
if successful:
ocUserDetails = OCUserDetails()
ocUserDetails.username = ocUsername
ocUserDetails.passwordHash = ocPasswordHash
ocUserDetails.connected = True
else:
QtGui.QMessageBox.warning(self, "Error",
"Wrong username or password!")