def size(self):
"""
size = comm.size()
Returns the size of the communicator
"""
return core.comm_size( self.id )
def gather( array, root, comm ):
"""
"""
myid = core.comm_rank(comm)
nprocs = core.comm_size(comm)
if( myid==root ):
print nm.size(array)
datatype = getMpiType(array)
size = nm.size(array)
shape = nm.shape(array)
rank = nm.rank(array)
else:
datatype = 0
size = 0
shape = 0
rank = 0
datatype = core.bcast( datatype, 1, core.MPI_INT, root, comm )
rank = core.bcast( rank, 1, core.MPI_INT, root, comm )
shape = core.bcast( shape, rank, core.MPI_INT, root, comm )
size = core.bcast( size, 1, core.MPI_INT, root, comm )
data = core.gather( array, size, datatype,
size, datatype,
root, comm )
if(myid == root):
print shape
shape[0] = shape[0] * nprocs
print shape
array = nm.asarray(data)
print nm.size(array)
array.shape = shape
return array
else:
return None
def gatherv( message, root = 0,comm=core.MPI_COMM_WORLD ):
rank = core.comm_rank( comm )
size = core.comm_size( comm )
#raise NotImplementedError
s = pickle.dumps(message)
recvlengths = core.gather(len(s),1,core.MPI_INT,
1, core.MPI_INT,
root, comm)
#if(rank==root):
# print "recvlengths:",recvlengths
displacements = [0]
displ = 0
for rl in recvlengths[:-1]:
displacements.append( displ+rl )
displ += rl
#if(rank==root):
# print "displacements:",displacements
data = core.gatherv(s, len(s), core.MPI_CHAR,
recvlengths, displacements, core.MPI_CHAR,
root, comm)
if rank==root:
data = data.tostring()
# print data
# print "length of data:",len(data)
i,n=0,0
# print recvlengths
realdata = []
for length in recvlengths:
n += length
# print "i,n=%d,%d"%(i,n)
# print data[i:n]
realdata.append(pickle.loads(data[i:n]))
i += length
else:
realdata = None
return realdata
def scatterv(buffer, root=0, comm=core.MPI_COMM_WORLD):
"""
Input Parameters
sendbuf: address of send buffer (choice, significant only at root)
sendcounts: integer array (of length group size) specifying the number of elements to send to each processor
displs: integer array (of length group size). Entry i specifies the displacement (relative to sendbuf from which to take the outgoing data to process i
sendtype: data type of send buffer elements (handle)
recvcount: number of elements in receive buffer (integer)
recvtype: data type of receive buffer elements (handle)
root: rank of sending process (integer)
comm: communicator (handle)
Output Parameter
recvbuf: address of receive buffer (choice)
"""
size = core.comm_size( comm )
rank = core.comm_rank( comm )
length = len(buffer)
sendbuffer = []
displacements = []
sendcounts = []
charbuffer = ""
if( rank == root ):
for b in buffer:
sendbuffer.append( pickle.dumps( b ) )
if( length % size == 0 ):
for x in xrange( size ):
start = x * size
end = start + size
elements = sendbuffer[start:end]
es = pickle.dumps(elements)
s = 0
d = 0
s = len(es)
sendcounts.append(s)
displacements.append(d)
d += s
charbuffer += es
else:
remainder = length % size
for x in xrange( size ):
if( x == 0 ):
start = 0
end = size + remainder
else:
start = remainder + (x * size)
end = start + size
elements = sendbuffer[start:end]
es = pickle.dumps(elements)
s = 0
d = 0
s = len(es)
sendcounts.append(s)
displacements.append(d)
d+=s
charbuffer+=es
# SEND:
recvbuffer = core.scatterv( charbuffer, sendcounts, displacements, core.MPI_CHAR,
sendcounts[rank], core.MPI_CHAR, root, comm )
data = pickle.loads(recvbuffer)
return data
def __init__(self, id):
communicator.Communicator.__init__(self, int(id))
self.size = core.comm_size(self.id)
self.rank = core.comm_rank(self.id)
def comm_size(self):
return core.comm_size(self.id)