def nest(self, parameter_s='', local_ns=None):
""" Start the MultiNest analysis and handle data interaction and IO """
from shell_colors import red
if local_ns.has_key('default'):
system = local_ns['default']
core.do_multinest(system)
else:
msg = red('ERROR: ') + 'Set a default system or provide a system '+\
'name with the -n option'
clogger.fatal(msg)
return
def nest(self, parameter_s='', local_ns=None):
""" Start the MultiNest analysis and handle data interaction and IO """
from shell_colors import red
try:
args = parse_arg_string('nest', parameter_s)
except DocoptExit:
print nest_usage.lstrip()
return
except SystemExit:
return
# print args
if 'default' in local_ns:
system = local_ns['default']
else:
msg = red('ERROR: ') + 'Set a default system or provide a system '+\
'name with the -n option'
clogger.fatal(msg)
return
user = args['-u']
resume = args['-r']
verbose = args['-v']
gp = args['--gp']
jitter = args['--jitter']
if gp and jitter:
msg = red('ERROR: ') + '--gp and --jitter are incompatible'
clogger.fatal(msg)
return
doplot = not args['--noplot']
saveplot = args['--saveplot']
dofeedback = args['--feed']
doMAPfeedback = args['--MAPfeed']
maxp = int(args['--maxp'])
restart = args['--restart']
nml_path = args['--nml']
startp = args['--startp']
if startp is not None:
startp = [int(i) for i in startp.split(',')]
else:
startp = []
try:
ncpu = int(args['--ncpu'])
except TypeError:
ncpu = None
train_quantity = args['--train'] if bool(args['--train']) else None
skip_train_mcmc = args['--skip-mcmc']
lin_quantity = args['--lin'] if bool(args['--lin']) else None
if bool(args['--train']) and not system.is_in_extras(train_quantity):
msg = red('ERROR: ') + 'The name "%s" is not available in extras.\n' % train_quantity
clogger.fatal(msg)
return
core.do_multinest(system, user, gp, jitter, maxp=maxp,
resume=resume, ncpu=ncpu, verbose=verbose,
training=train_quantity, skip_train_mcmc=skip_train_mcmc, lin=lin_quantity,
doplot=doplot, saveplot=saveplot, feed=dofeedback, MAPfeed=doMAPfeedback,
restart=restart, nml=nml_path, startp=startp)