def load_model():
config = util.initialize_from_env()
log_dir = config['log_dir']
model = cm.CorefModel(config)
with tf.Session() as session:
vars_to_restore = [v for v in tf.global_variables() if 'pg_reward' not in v.name]
saver = tf.train.Saver(vars_to_restore)
saver.restore(session, os.path.join(log_dir, "model.max.ckpt"))
all_vars = tf.trainable_variables()
values = session.run(all_vars)
return values
def __init__(self):
print("here we go")
# from util.initialize_from_env()
gpus = []
os.environ["CUDA_VISIBLE_DEVICES"] = ",".join(str(g) for g in gpus)
name = "final"
print("Running experiment: {}".format(name))
config = pyhocon.ConfigFactory.parse_file("experiments.conf")[name]
config["log_dir"] = util.mkdirs(os.path.join(config["log_root"], name))
print(pyhocon.HOCONConverter.convert(config, "hocon"))
self.model = cm.CorefModel(config)
self.session = tf.Session()
self.model.restore(self.session)
def _load_model(self,experiment):
util.set_gpus()
print "Running experiment: {}.".format(experiment)
config = util.get_config("experiments.conf")[experiment]
config["log_dir"] = util.mkdirs(os.path.join(config["log_root"], experiment))
util.print_config(config)
model = cm.CorefModel(config)
saver = tf.train.Saver()
log_dir = config["log_dir"]
with tf.Session() as session:
checkpoint_path = os.path.join(log_dir, "model.max.ckpt")
saver.restore(session, checkpoint_path)
self.model=model
self.session=session
def run_1model(eval_path):
outfpath = sys.argv[3] if len(sys.argv) == 4 else None
sys.argv = sys.argv[:2]
args = util.get_args()
config = util.initialize_from_env(args.experiment, args.logdir)
config['eval_path'] = eval_path
model = cm.CorefModel(config, eval_mode=True)
with tf.Session() as session:
model.restore(session, args.latest_checkpoint)
model.evaluate(session,
official_stdout=True,
pprint=False,
test=True,
outfpath=outfpath)
def run(config, input_filename, output_filename, cluster_key):
model = cm.CorefModel(config)
with tf.Session() as session:
model.restore(session)
with open(output_filename, "w") as output_file:
with open(input_filename) as input_file:
for example_num, line in enumerate(input_file.readlines()):
example = json.loads(line)
tensorized_example = model.tensorize_example(
example, is_training=False)
if tensorized_example is None:
example[cluster_key] = []
else:
feed_dict = {
i: t
for i, t in zip(model.input_tensors,
tensorized_example)
}
_, _, _, top_span_starts, top_span_ends, top_antecedents, top_antecedent_scores = session.run(
model.predictions, feed_dict=feed_dict)
predicted_antecedents = model.get_predicted_antecedents(
top_antecedents, top_antecedent_scores)
example[cluster_key], _ = model.get_predicted_clusters(
top_span_starts, top_span_ends,
predicted_antecedents)
if cluster_key == "predicted_clusters" and "clusters" in example:
del example["clusters"]
output_file.write(json.dumps(example))
output_file.write("\n")
if example_num % 100 == 0:
print("Decoded {} examples.".format(example_num + 1))
print(f"Predicted {example_num+1} examples.")
def __init__(self,
experiment: str = 'final',
path_context_emb: str = None,
path_head_emb: str = None,
dir_elmo: str = None,
dir_log_root: str = None,
path_char_vocab: str = None):
'''
:param experiment: 'final' or 'test'
:param path_context_emb: absolute path of context embedding
:param path_head_emb: absolute path of head embedding
:param dir_elmo: absolute path of elmo directory
:param dir_log_root: absolute path of log root directory
:param path_char_vocab: absolute path of char_vocab file
'''
super(E2ECoref, self).__init__()
self.config = util.initialize_experiment(experiment, path_context_emb,
path_head_emb, dir_elmo,
dir_log_root, path_char_vocab)
self.model = coref_model.CorefModel(self.config)
self.session = tf.Session() # Currently no closing operation
self.model.restore(self.session)
import util
from tensorflow.python import debug as tf_debug
from sklearn import metrics
from tensorboard import summary as summary_lib
from datetime import datetime
if __name__ == "__main__":
config = util.initialize_from_env()
report_frequency = config["report_frequency"]
eval_frequency = config["eval_frequency"]
# cluster_config = config["cluster"]
# util.set_gpus(*cluster_config["gpus"])
model = cm.CorefModel(config)
saver = tf.train.Saver()
TIMESTAMP = "{0:%Y-%m-%dT%H-%M-%S/}".format(datetime.now())
log_dir = util.mkdirs(os.path.join(config["log_dir"],
"Parallel_Postulate"))
writer = tf.summary.FileWriter(log_dir, flush_secs=20)
max_f1 = 0
max_presission = 0
max_recall = 0
max_accuracy = 0
coord = tf.train.Coordinator()
with tf.Session() as session:
# session = tf_debug.LocalCLIDebugWrapperSession(session)
#!/usr/bin/env python
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import tensorflow as tf
import util
import coref_model as cm
if __name__ == "__main__":
args = util.get_args()
config = util.initialize_from_env(args.experiment, args.logdir)
config["eval_path"] = "test.english.jsonlines"
config["conll_eval_path"] = "test.english.v4_gold_conll"
config["context_embeddings"]["path"] = "glove.840B.300d.txt"
model = cm.CorefModel(config, eval_mode=True)
with tf.Session() as session:
model.restore(session, args.latest_checkpoint)
model.evaluate(session, official_stdout=True, pprint=False, test=True)
import conll
import metrics
if __name__ == "__main__":
if "GPU" in os.environ:
util.set_gpus(int(os.environ["GPU"]))
else:
util.set_gpus()
names = sys.argv[1:]
print "Ensembling models from {}.".format(names)
configs = util.get_config("experiments.conf")
main_config = configs[names[0]]
model = cm.CorefModel(main_config)
model.load_eval_data()
saver = tf.train.Saver()
with tf.Session() as session:
all_mention_scores = collections.defaultdict(list)
for name in names:
config = configs[name]
log_dir = os.path.join(config["log_root"], name)
checkpoint_path = os.path.join(log_dir, "model.max.ckpt")
print "Computing mention scores for {}".format(checkpoint_path)
saver.restore(session, checkpoint_path)
for example_num, (tensorized_example,