def __init__(self, fname=None, fileobj=None):
if fileobj:
self.bed = BedFile(fileobj=fileobj)
self.fname = '*fileobj*'
else:
self.bed = BedFile(fname)
self.fname = fname
Model.__init__(self)
def __init__(self, fname=None, fileobj=None):
if fileobj:
self.bed = BedFile(fileobj=fileobj)
self.fname = '*fileobj*'
else:
self.bed = BedFile(fname)
self.fname = fname
Model.__init__(self)
def __init__(self, fname):
self.fname = fname
Model.__init__(self)
self.gtf = GTF(self.fname)
gene_gen = self.gtf.genes
gene = gene_gen.next()
self.has_isoform = 'isoform_id' in gene.attributes
self.has_biotype = 'gene_biotype' in gene.attributes
def __init__(self, fname):
self.fname = fname
Model.__init__(self)
self.gtf = GTF(self.fname)
gene_gen = self.gtf.genes
gene = gene_gen.next()
self.has_isoform = 'isoform_id' in gene.attributes
self.has_biotype = 'gene_biotype' in gene.attributes
def __init__(self, fname):
self.fname = fname
Model.__init__(self)
def __init__(self, binsize):
self.binsize = int(binsize)
Model.__init__(self)
def __init__(self, fname):
self.fname = fname
Model.__init__(self)
def __init__(self, binsize):
self.binsize = int(binsize)
Model.__init__(self)