def test_estimate_with_fixed(self, jhu_data, population_data, country):
# Dataset
population = population_data.value(country)
record_df = jhu_data.subset(country, population=population)
# Setting
unit = PhaseUnit("27May2020", "27Jun2020", population)
unit.set_ode(model=SIR, tau=360, rho=0.01)
# Parameter estimation
unit.estimate(record_df=record_df)
assert unit.tau == unit.to_dict()[Term.TAU] == 360
assert unit.to_dict()["rho"] == 0.01
def test_estimate(self, jhu_data, population_data, country):
# Dataset
population = population_data.value(country)
record_df = jhu_data.subset(country, population=population)
# Parameter estimation
unit = PhaseUnit("27May2020", "27Jun2020", population)
with pytest.raises(NameError):
unit.estimate()
unit.set_ode(model=SIR)
with pytest.raises(ValueError):
unit.estimate()
unit.record_df = record_df
assert set(unit.record_df.columns) == set(Term.SUB_COLUMNS)
unit.estimate(timeout=20)
# Check results
assert isinstance(unit.estimator, Estimator)
assert set(SIR.PARAMETERS).issubset(unit.to_dict())
assert set(SIR.DAY_PARAMETERS).issubset(unit.to_dict())
assert None not in unit.to_dict().values()