def OnInit(self):
"""Initialize CPA
"""
"""List of tables created by the user during this session"""
self.user_tables = []
# splashscreen
splashimage = cpa.icons.cpa_splash.ConvertToBitmap()
# If the splash image has alpha, it shows up transparently on
# windows, so we blend it into a white background.
splashbitmap = wx.EmptyBitmapRGBA(splashimage.GetWidth(), splashimage.GetHeight(), 255, 255, 255, 255)
dc = wx.MemoryDC()
dc.SelectObject(splashbitmap)
dc.DrawBitmap(splashimage, 0, 0)
dc.Destroy() # necessary to avoid a crash in splashscreen
splash = wx.SplashScreen(splashbitmap, wx.SPLASH_CENTRE_ON_SCREEN | wx.SPLASH_TIMEOUT, 2000, None, -1)
self.splash = splash
p = Properties.getInstance()
if not p.is_initialized():
from cpa.guiutils import show_load_dialog
splash.Destroy()
if not show_load_dialog():
logging.error("CellProfiler Analyst requires a properties file. Exiting.")
return False
self.frame = MainGUI(p, None, size=(860, -1))
self.frame.Show(True)
db = cpa.dbconnect.DBConnect.getInstance()
# Black magic: Bus errors occur on Mac OS X if we wait until
# the JVM or the wx event look has started to connect. But it
# has to be done after we have read the properties file. So we
# do it here.
db.connect()
db.register_gui_parent(self.frame)
# The JVM has to be started after db.connect(), otherwise bus errors
# occur on Mac OS X.
javabridge.start_vm(class_path=bioformats.JARS, run_headless=False)
javabridge.attach()
javabridge.activate_awt()
try:
if __version__ != -1:
import cellprofiler.utilities.check_for_updates as cfu
cfu.check_for_updates(
"http://cellprofiler.org/CPAupdate.html",
max(__version__, cpaprefs.get_skip_version()),
new_version_cb,
user_agent="CPAnalyst/2.0.%d" % (__version__),
)
except ImportError:
logging.warn(
"CPA was unable to check for updates. Could not import cellprofiler.utilities.check_for_updates."
)
return True
def Start(self):
'''Initialize CPA
'''
if hasattr(sys, "frozen") and sys.platform == "darwin":
# Some versions of Macos like to put CPA in a sandbox. If we're frozen Java should be packed in,
# so let's just figure out the directory on run time.
os.environ["CP_JAVA_HOME"] = os.path.abspath(
os.path.join(sys.prefix, "..", "Resources/Home"))
'''List of tables created by the user during this session'''
self.user_tables = []
p = Properties()
self.frame = MainGUI(p, None, size=(1000, -1))
self.frame.Show() # Show frame
if not p.is_initialized():
from cpa.guiutils import show_load_dialog
try:
if not show_load_dialog():
example_link_address = 'cellprofileranalyst.org'
dlg = wx.MessageDialog(
None,
'CellProfiler Analyst requires a properties file. Download an example at %s'
% (example_link_address), 'Properties file required',
wx.OK)
response = dlg.ShowModal()
logging.error(
'CellProfiler Analyst requires a properties file.')
return False
else:
db = DBConnect()
db.connect()
db.register_gui_parent(self.frame)
except Exception as e:
p._initialized = False
# Fully raising the exception during this startup sequence will crash CPA.
# So we'll display it manually.
show_exception_as_dialog(type(e),
e,
e.__traceback__,
raisefurther=False)
logging.critical(e)
try:
from cpa.updatechecker import check_update
check_update(self.frame, event=False)
except:
logging.warn("CPA was unable to check for updates.")
return True
def on_load_properties(self, evt):
# Show confirmation dialog.
if self.properties.is_initialized():
dlg = wx.MessageDialog(
None,
"Loading a new file will close all windows and clear unsaved data. Proceed?",
'Load properties file', wx.OK | wx.CANCEL)
response = dlg.ShowModal()
if response != wx.ID_OK:
return
# Close all subwindows
for window in self.GetChildren():
if isinstance(window, wx.Frame):
window.Destroy()
# Shut down existing connections and wipe properties.
db = DBConnect()
db.Disconnect()
p = Properties()
p.clear()
self.console.Clear()
if not p.is_initialized():
from cpa.guiutils import show_load_dialog
if not show_load_dialog():
example_link_address = 'cellprofileranalyst.org'
dlg = wx.MessageDialog(
None,
'CellProfiler Analyst requires a properties file. Download an example at %s'
% (example_link_address), 'Properties file required',
wx.OK)
response = dlg.ShowModal()
logging.error(
'CellProfiler Analyst requires a properties file.')
else:
db.connect()
db.register_gui_parent(self)
def Start(self):
'''Initialize CPA
'''
'''List of tables created by the user during this session'''
self.user_tables = []
# splashscreen
splashimage = cpa.icons.cpa_splash.ConvertToBitmap()
# If the splash image has alpha, it shows up transparently on
# windows, so we blend it into a white background.
splashbitmap = wx.EmptyBitmapRGBA(splashimage.GetWidth(),
splashimage.GetHeight(),
255, 255, 255, 255)
dc = wx.MemoryDC()
dc.SelectObject(splashbitmap)
dc.DrawBitmap(splashimage, 0, 0)
dc.Destroy() # necessary to avoid a crash in splashscreen
splash = wx.SplashScreen(splashbitmap, wx.SPLASH_CENTRE_ON_SCREEN |
wx.SPLASH_TIMEOUT, 2000, None, -1)
self.splash = splash
p = Properties.getInstance()
if not p.is_initialized():
from cpa.guiutils import show_load_dialog
splash.Destroy()
if not show_load_dialog():
splash.Destroy()
example_link_address = 'cellprofiler.org'
dlg = wx.MessageDialog(None, 'CellProfiler Analyst requires a properties file. Download an example at %s' % (
example_link_address), 'Properties file required', wx.OK)
response = dlg.ShowModal()
logging.error('CellProfiler Analyst requires a properties file. Exiting.')
return False
self.frame = MainGUI(p, None, size=(1000,-1))
db = DBConnect.getInstance()
# Black magic: Bus errors occur on Mac OS X if we wait until
# the JVM or the wx event look has started to connect. But it
# has to be done after we have read the properties file. So we
# do it here.
db.connect()
db.register_gui_parent(self.frame)
# The JVM has to be started after db.connect(), otherwise bus errors
# occur on Mac OS X.
javabridge.start_vm(class_path=bioformats.JARS, run_headless=True)
# removes the log4j warnings
javabridge.attach()
# TODO: check for updates
try:
if __version__ != -1:
import cpa.util.check_for_updates as cfu
cfu.check_for_updates('http://cellprofiler.org/updates/CPA.html',
max(__version__, cpa.cpaprefs.get_skip_version()),
new_version_cb,
user_agent='CPAnalyst/%s'%(__version__))
except ImportError:
logging.warn("CPA was unable to check for updates. Could not import cpa.util.check_for_updates.")
self.frame.Show() # Show frame
return True
def Start(self):
'''Initialize CPA
'''
'''List of tables created by the user during this session'''
self.user_tables = []
# splashscreen
splashimage = cpa.icons.cpa_splash.ConvertToBitmap()
# If the splash image has alpha, it shows up transparently on
# windows, so we blend it into a white background.
splashbitmap = wx.EmptyBitmapRGBA(splashimage.GetWidth(),
splashimage.GetHeight(),
255, 255, 255, 255)
dc = wx.MemoryDC()
dc.SelectObject(splashbitmap)
dc.DrawBitmap(splashimage, 0, 0)
dc.Destroy() # necessary to avoid a crash in splashscreen
splash = wx.SplashScreen(splashbitmap, wx.SPLASH_CENTRE_ON_SCREEN |
wx.SPLASH_TIMEOUT, 2000, None, -1)
self.splash = splash
p = Properties.getInstance()
if not p.is_initialized():
from cpa.guiutils import show_load_dialog
splash.Destroy()
if not show_load_dialog():
splash.Destroy()
example_link_address = 'cellprofiler.org'
dlg = wx.MessageDialog(None, 'CellProfiler Analyst requires a properties file. Download an example at %s' % (
example_link_address), 'Properties file required', wx.OK)
response = dlg.ShowModal()
logging.error('CellProfiler Analyst requires a properties file. Exiting.')
return False
self.frame = MainGUI(p, None, size=(1000,-1))
# def show_frame():
# import time
# res = self.frame.Show()
# wx.CallAfter(show_frame)
db = cpa.dbconnect.DBConnect.getInstance()
# Black magic: Bus errors occur on Mac OS X if we wait until
# the JVM or the wx event look has started to connect. But it
# has to be done after we have read the properties file. So we
# do it here.
db.connect()
db.register_gui_parent(self.frame)
# The JVM has to be started after db.connect(), otherwise bus errors
# occur on Mac OS X.
javabridge.start_vm(class_path=bioformats.JARS, run_headless=True)
# removes the log4j warnings
from bioformats import log4j
log4j.basic_config()
javabridge.attach()
# javabridge.activate_awt()
try:
if __version__ != -1:
import cpa.util.check_for_updates as cfu
cfu.check_for_updates('http://cellprofiler.org/updates/CPA.html',
max(__version__, cpa.cpaprefs.get_skip_version()),
new_version_cb,
user_agent='CPAnalyst/%s'%(__version__))
except ImportError:
logging.warn("CPA was unable to check for updates. Could not import cpa.util.check_for_updates.")
self.frame.Show() # Show frame
return True