def test_dist_minus_strand(self):
""" Test minus-strand behavior """
pos = 100
strand = "-"
dist = 2
interval_start, interval_end = cI.create_end_piece(pos, strand, dist)
assert interval_start == 100
assert interval_end == 102
def make_end_interval(entry, dist):
""" Extract end position of entry and return interval of size dist
"""
strand = entry[5]
transcript_end = int(entry[2])
interval_start, interval_end = cI.create_end_piece(transcript_end, strand,
dist)
return interval_start, interval_end
def test_dist_plus_strand(self):
""" Test plus-strand behavior """
pos = 110
strand = "+"
dist = 2
interval_start, interval_end = cI.create_end_piece(pos, strand, dist)
assert interval_start == 108
assert interval_end == 110