def test_ctc_pseudo_cost_skip_softmax_stability():
LENGTH = 500
BATCHES = 40
CLASSES = 2
N_LABELS = 45
y_hat = T.tensor3('features')
input_mask = T.matrix('features_mask')
y_hat_mask = input_mask
y = T.lmatrix('phonemes')
y_mask = T.matrix('phonemes_mask')
pseudo_cost = ctc_cost.pseudo_cost(y, y_hat, y_mask, y_hat_mask,
skip_softmax=True)
Y_hat = np.asarray(np.random.normal(0, 1, (LENGTH, BATCHES, CLASSES + 1)),
dtype=floatX)
Y = np.zeros((N_LABELS, BATCHES), dtype='int64')
Y[25:, :] = 1
Y_hat_mask = np.ones((LENGTH, BATCHES), dtype=floatX)
Y_hat_mask[-5:] = 0
# default blank symbol is the highest class index (3 in this case)
Y_mask = np.asarray(np.ones_like(Y), dtype=floatX)
Y_mask[30:] = 0
pseudo_grad = T.grad(pseudo_cost.sum(), y_hat)
test_grad = pseudo_grad.eval({y_hat: Y_hat, y: Y,
y_hat_mask: Y_hat_mask, y_mask: Y_mask})
y_hat_softmax = T.exp(y_hat) / T.exp(y_hat).sum(2)[:, :, None]
pseudo_cost2 = ctc_cost.pseudo_cost(y, y_hat_softmax, y_mask, y_hat_mask,
skip_softmax=False)
pseudo_grad2 = T.grad(pseudo_cost2.sum(), y_hat)
test_grad2 = pseudo_grad2.eval({y_hat: Y_hat, y: Y,
y_hat_mask: Y_hat_mask, y_mask: Y_mask})
testing.assert_almost_equal(test_grad, test_grad2, decimal=4)
def test_ctc_pseudo_cost():
LENGTH = 500
BATCHES = 40
CLASSES = 2
N_LABELS = 45
y_hat = T.tensor3('features')
input_mask = T.matrix('features_mask')
y_hat_mask = input_mask
y = T.lmatrix('phonemes')
y_mask = T.matrix('phonemes_mask')
pseudo_cost = ctc_cost.pseudo_cost(y, y_hat, y_mask, y_hat_mask)
Y_hat = np.zeros((LENGTH, BATCHES, CLASSES + 1), dtype=floatX)
Y_hat[:, :, 0] = .75
Y_hat[:, :, 1] = .2
Y_hat[:, :, 2] = .05
Y_hat[3, 0, 0] = .3
Y_hat[3, 0, 1] = .4
Y_hat[3, 0, 2] = .3
Y = np.zeros((N_LABELS, BATCHES), dtype='int64')
Y[25:, :] = 1
Y_hat_mask = np.ones((LENGTH, BATCHES), dtype=floatX)
Y_hat_mask[-5:] = 0
# default blank symbol is the highest class index (3 in this case)
Y_mask = np.asarray(np.ones_like(Y), dtype=floatX)
Y_mask[30:] = 0
cost = pseudo_cost.eval({y_hat: Y_hat, y: Y,
y_hat_mask: Y_hat_mask, y_mask: Y_mask})
pseudo_grad = T.grad(ctc_cost.pseudo_cost(y, y_hat,
y_mask, y_hat_mask).sum(),
y_hat)
#test_grad2 = pseudo_grad.eval({y_hat: Y_hat, y: Y,
# y_hat_mask: Y_hat_mask, y_mask: Y_mask})
# TODO: write some more meaningful asserts here
assert cost.sum() > 0
def setup(self):
# setup Lasagne Recurrent network
# The output from the network is shape
# a) output_lin_ctc is the activation before softmax (input_seq_len, batch_size, num_classes + 1)
# b) ouput_softmax is the output after softmax (batch_size, input_seq_len, num_classes + 1)
l_inp = InputLayer(shape=(self.num_batch, self.input_seq_len, self.num_inputs))
l_mask = InputLayer(shape=(self.num_batch, self.input_seq_len))
l_emb = EmbeddingLayer(l_inp, input_size=self.num_inputs, output_size=self.num_features)
l_rnn = LSTMLayer(l_inp, num_units=self.num_units, peepholes=True, mask_input=l_mask)
l_rnn_shp = ReshapeLayer(l_rnn, shape=(-1, self.num_units))
l_out = DenseLayer(l_rnn_shp, num_units=self.num_outputs, nonlinearity=identity)
l_out_shp = ReshapeLayer(l_out, shape=(-1, self.input_seq_len, self.num_outputs))
# dimshuffle to shape format (input_seq_len, batch_size, num_classes + 1)
#l_out_shp_ctc = lasagne.layers.DimshuffleLayer(l_out_shp, (1, 0, 2))
l_out_softmax = NonlinearityLayer(l_out, nonlinearity=softmax)
l_out_softmax_shp = ReshapeLayer(l_out_softmax, shape=(-1, self.input_seq_len, self.num_outputs))
# calculate grad and cost
output_lin_ctc = get_output(l_out_shp, {l_inp: self.x, l_mask: self.mask_x})
output_softmax = get_output(l_out_softmax_shp, {l_inp: self.x, l_mask: self.mask_x})
all_params = get_all_params(l_out_softmax_shp, trainable=True) # dont learn embeddinglayer
# the CTC cross entropy between y and linear output network
pseudo_cost = ctc_cost.pseudo_cost(self.y, output_lin_ctc, self.mask_y, self.mask_x)
# calculate the gradients of the CTC wrt. linar output of network
pseudo_grad = T.grad(pseudo_cost.sum() / self.num_batch, all_params)
true_cost = ctc_cost.cost(self.y, output_softmax, self.mask_y, self.mask_x)
cost = T.mean(true_cost)
shared_lr = theano.shared(lasagne.utils.floatX(0.001))
#updates = lasagne.updates.sgd(pseudo_cost_grad, all_params, learning_rate=shared_lr)
#updates = lasagne.updates.apply_nesterov_momentum(updates, all_params, momentum=0.9)
updates = lasagne.updates.rmsprop(pseudo_grad, all_params, learning_rate=shared_lr)
self.train = theano.function([self.x, self.mask_x, self.y, self.mask_y],
[output_softmax, cost], updates=updates)
self.test = theano.function([self.x, self.mask_x], [output_softmax])
def setup(self):
# setup Lasagne Recurrent network
# The output from the network is shape
# a) output_lin_ctc is the activation before softmax (input_seq_len, batch_size, num_classes + 1)
# b) ouput_softmax is the output after softmax (batch_size, input_seq_len, num_classes + 1)
l_inp = InputLayer(shape=(self.num_batch, self.input_seq_len,
self.num_inputs))
l_mask = InputLayer(shape=(self.num_batch, self.input_seq_len))
l_emb = EmbeddingLayer(l_inp,
input_size=self.num_inputs,
output_size=self.num_features)
l_rnn = LSTMLayer(l_inp,
num_units=self.num_units,
peepholes=True,
mask_input=l_mask)
l_rnn_shp = ReshapeLayer(l_rnn, shape=(-1, self.num_units))
l_out = DenseLayer(l_rnn_shp,
num_units=self.num_outputs,
nonlinearity=identity)
l_out_shp = ReshapeLayer(l_out,
shape=(-1, self.input_seq_len,
self.num_outputs))
# dimshuffle to shape format (input_seq_len, batch_size, num_classes + 1)
#l_out_shp_ctc = lasagne.layers.DimshuffleLayer(l_out_shp, (1, 0, 2))
l_out_softmax = NonlinearityLayer(l_out, nonlinearity=softmax)
l_out_softmax_shp = ReshapeLayer(l_out_softmax,
shape=(-1, self.input_seq_len,
self.num_outputs))
# calculate grad and cost
output_lin_ctc = get_output(l_out_shp, {
l_inp: self.x,
l_mask: self.mask_x
})
output_softmax = get_output(l_out_softmax_shp, {
l_inp: self.x,
l_mask: self.mask_x
})
all_params = get_all_params(
l_out_softmax_shp, trainable=True) # dont learn embeddinglayer
# the CTC cross entropy between y and linear output network
pseudo_cost = ctc_cost.pseudo_cost(self.y, output_lin_ctc, self.mask_y,
self.mask_x)
# calculate the gradients of the CTC wrt. linar output of network
pseudo_grad = T.grad(pseudo_cost.sum() / self.num_batch, all_params)
true_cost = ctc_cost.cost(self.y, output_softmax, self.mask_y,
self.mask_x)
cost = T.mean(true_cost)
shared_lr = theano.shared(lasagne.utils.floatX(0.001))
#updates = lasagne.updates.sgd(pseudo_cost_grad, all_params, learning_rate=shared_lr)
#updates = lasagne.updates.apply_nesterov_momentum(updates, all_params, momentum=0.9)
updates = lasagne.updates.rmsprop(pseudo_grad,
all_params,
learning_rate=shared_lr)
self.train = theano.function(
[self.x, self.mask_x, self.y, self.mask_y], [output_softmax, cost],
updates=updates)
self.test = theano.function([self.x, self.mask_x], [output_softmax])
def test_lasagne_ctc():
import lasagne
from lasagne.layers import (
LSTMLayer,
InputLayer,
DenseLayer,
NonlinearityLayer,
ReshapeLayer,
EmbeddingLayer,
RecurrentLayer,
)
import theano
import theano.tensor as T
import numpy as np
num_batch, input_seq_len = 1, 12
num_classes = 5
target_seq_len = 3
num_rnn_units = 50
def print_pred(y_hat):
blank_symbol = num_classes
res = []
for i, s in enumerate(y_hat):
if (s != blank_symbol) and (i == 0 or s != y_hat[i - 1]):
res += [s]
if len(res) > 0:
return "".join(map(str, list(res)))
else:
return "-" * target_seq_len
Y_hat = np.asarray(np.random.normal(0, 1, (input_seq_len, num_batch, num_classes + 1)), dtype=floatX)
Y = np.zeros((target_seq_len, num_batch), dtype="int64")
Y[25:, :] = 1
Y_hat_mask = np.ones((input_seq_len, num_batch), dtype=floatX)
Y_hat_mask[-5:] = 0
# default blank symbol is the highest class index (3 in this case)
Y_mask = np.asarray(np.ones_like(Y), dtype=floatX)
X = np.random.random((num_batch, input_seq_len)).astype("int32")
y = T.imatrix("phonemes")
x = T.imatrix() # batchsize, input_seq_len, features
print "num_batch =", num_batch, "input_seq_len =", input_seq_len
print "num_classes =", num_classes
# setup Lasagne Recurrent network
# The output from the network is shape
# a) output_lin_ctc is the activation before softmax (input_seq_len, batch_size, num_classes + 1)
# b) ouput_softmax is the output after softmax (batch_size, input_seq_len, num_classes + 1)
l_inp = InputLayer((num_batch, input_seq_len))
netshape = lasagne.layers.get_output_shape(l_inp)
print ("Layer l_inp shape:")
print (netshape)
l_emb = EmbeddingLayer(
l_inp, input_size=num_classes + 1, output_size=num_classes + 1, W=np.identity(num_classes + 1).astype("float32")
)
netshape = lasagne.layers.get_output_shape(l_emb)
print ("Layer l_emb shape:")
print (netshape)
l_rnn = LSTMLayer(l_emb, num_units=num_rnn_units)
netshape = lasagne.layers.get_output_shape(l_rnn)
print ("Layer l_rnn shape:")
print (netshape)
l_rnn_shp = ReshapeLayer(l_rnn, (num_batch * input_seq_len, num_rnn_units))
netshape = lasagne.layers.get_output_shape(l_rnn_shp)
print ("Layer l_rnn_shp shape:")
print (netshape)
l_out = DenseLayer(l_rnn_shp, num_units=num_classes + 1, nonlinearity=lasagne.nonlinearities.identity) # + blank
netshape = lasagne.layers.get_output_shape(l_out)
print ("Layer l_out shape:")
print (netshape)
l_out_shp = ReshapeLayer(l_out, (num_batch, input_seq_len, num_classes + 1))
netshape = lasagne.layers.get_output_shape(l_out_shp)
print ("Layer l_out_shp shape:")
print (netshape)
# dimshuffle to shape format (input_seq_len, batch_size, num_classes + 1)
# l_out_shp_ctc = lasagne.layers.DimshuffleLayer(l_out_shp, (1, 0, 2))
l_out_softmax = NonlinearityLayer(l_out, nonlinearity=lasagne.nonlinearities.softmax)
netshape = lasagne.layers.get_output_shape(l_out_softmax)
print ("Layer l_out_softmax shape:")
print (netshape)
l_out_softmax_shp = ReshapeLayer(l_out_softmax, (num_batch, input_seq_len, num_classes + 1))
netshape = lasagne.layers.get_output_shape(l_out_softmax_shp)
print ("Layer l_out_softmax_shp shape:")
print (netshape)
output_lin_ctc = lasagne.layers.get_output(l_out_shp, x)
output_softmax = lasagne.layers.get_output(l_out_softmax_shp, x)
all_params = l_rnn.get_params(trainable=True) # dont learn embeddingl
print "x type:", type(x)
print "x shape", x.shape
print "y type:", type(y)
print "y shape", y.shape
###############
# GRADIENTS #
###############
# the CTC cross entropy between y and linear output network
# (num_batch,t,class+1)
# output_lin_ctc shape (1,12,6)
pseudo_cost = ctc_cost.pseudo_cost(y, output_lin_ctc)
# calculate the gradients of the CTC wrt. linar output of network
pseudo_cost_grad = T.grad(pseudo_cost.sum() / num_batch, all_params)
true_cost = ctc_cost.cost(y, output_softmax)
cost = T.mean(true_cost)
sh_lr = theano.shared(lasagne.utils.floatX(0.01))
updates = lasagne.updates.rmsprop(pseudo_cost_grad, all_params, learning_rate=sh_lr)
# x shape (1,12)
# y shape (1,3)
train = theano.function([x, y], [output_lin_ctc, output_softmax, cost, pseudo_cost], updates=updates)
# Create test dataset
num_samples = 10
np.random.seed(1234)
# create simple dataset of format
# input [5,5,5,5,5,2,2,2,2,2,3,3,3,3,3,....,1,1,1,1]
# targets [5,2,3,...,1]
# etc...
input_lst, output_lst = [], []
for i in range(num_samples):
this_input = []
this_output = []
for j in range(target_seq_len):
this_class = np.random.randint(num_classes)
this_input += [this_class] * 3 + [num_classes]
this_output += [this_class]
this_input += (input_seq_len - len(this_input)) * [this_input[-1]]
input_lst.append(this_input)
output_lst.append(this_output)
print this_input, this_output
input_arr = np.concatenate([input_lst]).astype("int32")
y_arr = np.concatenate([output_lst]).astype("int32")
print "y_arr shape:", y_arr.shape
y_mask_arr = np.ones((num_batch, target_seq_len), dtype="float32")
input_mask_arr = np.ones((num_batch, input_seq_len), dtype="float32")
for nn in range(1000):
cost_lst = []
shuffle = np.random.permutation(num_samples)
for i in range(num_samples // num_batch):
idx = shuffle[i * num_batch : (i + 1) * num_batch]
_, output_softmax_val, cost, pseudo_cost_val = train(input_arr[idx], y_arr[idx])
print "x=", input_arr[idx]
# x shape (1,12)
print "x shape", input_arr[idx].shape
print "y=", y_arr[idx]
# y shape (1,3)
print "y shape", y_arr[idx].shape
output_softmax_lst = output_softmax_val
labels_lst = y_arr[idx]
cost_lst += [cost]
# testing.assert_almost_equal(pseudo_cost, pseudo_cost_old, decimal=4)
# testing.assert_array_almost_equal(pseudo_cost_val, pseudo_cost_old_val)
if (nn + 1) % 20 == 0:
DECAY = 1.5
new_lr = lasagne.utils.floatX(sh_lr.get_value() / DECAY)
sh_lr.set_value(new_lr)
print "----------------------->NEW LR:", new_lr
print nn, "Mean cost:", np.mean(cost_lst)
if (nn + 1) % 4 == 0:
for jj in range(num_batch):
pred = print_pred(np.argmax(output_softmax_val[jj], axis=-1))
true = "".join(map(str, labels_lst[jj]))
pred += (target_seq_len - len(pred)) * " "
print "pred =", pred, "true =", true
#recognizer = SpeechRecognizer(
# num_features=num_features, dims_bottom=[],
# dims_bidir=conf.dims_transition, dims_top=[num_classes],
# bidir_trans=GatedRecurrent, bottom_activation=None)
# ******************* output *******************
y_hat = recognizer.apply(x, x_m)
y_hat.name = 'outputs'
y_hat_softmax = NDimensionalSoftmax().apply(y_hat, extra_ndim=y_hat.ndim - 2)
y_hat_softmax.name = 'outputs_softmax'
# there is a cost function for monitoring and for training, because one is more stable to compute
# gradients and seems also to be more memory efficient, but does not compute the true cost.
if conf.task == 'CTC':
cost_train = ctc.pseudo_cost(y, y_hat, y_m, x_m).mean()
cost_train.name = "cost_train"
cost_monitor = ctc.cost(y, y_hat_softmax, y_m, x_m).mean()
cost_monitor.name = "cost_monitor"
elif conf.task == 'framewise':
cost_train = categorical_crossentropy_batch().apply(y_hat_softmax, y, x_m)
cost_train.name = 'cost'
cost_monitor = cost_train
else:
raise ValueError, conf.task
recognizer.initialize()
cg = ComputationGraph([cost_train, y_hat, x_m, y, y_m])
weights = VariableFilter(roles=[WEIGHT])(cg.variables)
def main(paramFile="",num_epochs=5):
# Prepare Theano variables for inputs and targets
input_var = T.tensor4('inputs')
target_var = T.ivector('targets')
#y = T.matrix()
label = T.matrix()
blank_symbol = T.scalar()
# Create neural network model (depending on first command line parameter)
print("Building model and compiling functions...")
network,ctcout = build_cnn(input_var)
#jin
if paramFile=="":
print("Train a new network!")
else:
print("Load well trained parameters from "+paramFile)
f = file(paramFile,'rb')
params = cPickle.load(f)
f.close()
lasagne.layers.set_all_param_values(network,params)
# Create a loss expression for training, i.e., a scalar objective we want
# to minimize the objective function:
y = lasagne.layers.get_output(ctcout)
ctc_cost = CTC.pseudo_cost(label,y)
params = lasagne.layers.get_all_params(ctcout, trainable=True)
pseudo_cost_grad = T.grad(ctc_cost.sum(),params)
updates = lasagne.updates.nesterov_momentum(
pseudo_cost_grad, params, learning_rate=0.0001, momentum=0.9)
train_fn = theano.function([input_var, label], ctc_cost, updates=updates,allow_input_downcast=True)
test_prediction = lasagne.layers.get_output(network, deterministic=True)
test_loss = lasagne.objectives.categorical_crossentropy(test_prediction,
target_var)
test_loss = test_loss.mean()
test_acc = T.mean(T.eq(T.argmax(test_prediction, axis=1), target_var),
dtype=theano.config.floatX)
val_fn = theano.function([input_var, target_var], [test_loss, test_acc])
# Finally, launch the training loop.
print("Starting training...")
#jin
# return numpy.ndarray
train_out = T.argmax(test_prediction, axis=1)
train_acc = T.mean(T.eq(train_out, target_var),
dtype=theano.config.floatX)
train_label = theano.function([input_var,target_var],[train_out,train_acc,test_prediction])
val_out = T.argmax(test_prediction, axis=1)
val_label = theano.function([input_var],val_out)
# We iterate over epochs:
#jin
# train set and validation set
dirpath = os.getcwd()
print('dirpath = '+dirpath)
train_dirpath = dirpath + '/train'
test_dirpath = dirpath + '/test'
total = len(os.listdir(train_dirpath)) / 2
train_total_num = int(0.9 * total)
validation_total_num = total - train_total_num
print('Train num = ' + str(train_total_num))
print('Validation num = '+str(validation_total_num))
blank_symbol_num = 39
for epoch in range(num_epochs):
# change current directory
os.chdir(train_dirpath)
# In each epoch, we do a full pass over the training data:
train_err = 0
train_batches = 0
start_time = time.time()
counter = 0
# And a full pass over the validation data:
val_err = 0
val_acc = 0
val_batches = 0
#for batch in loadArray(train_dirpath):
for batch in loadArray(train_dirpath):
inputs, targets, batchNum = batch
print('spectro shape:')
print(inputs.shape)
print('label shape:')
print(targets.shape)
label_without_blank = PER.phn2targetseq(targets,blank_symbol_num)
#label_without_blank = label_without_blank[0,:]
print('noblanklabel shape = '+str(label_without_blank.shape))
counter += 1
if counter < train_total_num:
train_batches += batchNum
# valwrd = predicting output frames
# wrd = predicting output phoneme
trainwrd, acc, yy = train_label(inputs,targets)
print("y shape = "+str(yy.shape))
ctc_loss = train_fn(inputs, label_without_blank)
train_err += ctc_loss
#ctc_loss = ctc_fn(yy, label_without_blank, blank_symbol_num)
print('ctc loss = '+str(ctc_loss))
print('train acc = '+str(acc))
wrd = PER.phn2word(trainwrd)
print('train output word=')
print(wrd)
labelphn = PER.phn2word(targets)
print('labelphn=')
print(labelphn)
print(' Train set completed : '+str(float(counter)/train_total_num*100))
else:
err, acc = val_fn(inputs, targets)
val_err += err * batchNum
val_acc += acc * batchNum
val_batches += batchNum
# valwrd = predicting output frames
# wrd = predicting output phoneme
valwrd = val_label(inputs)
print('test acc = '+str(acc))
print('test output word=')
valwrd = PER.phn2word(valwrd)
print(valwrd)
labelphn = PER.phn2word(targets)
print('labelphn=')
print(labelphn)
print(' Validation set completed : '+str(float(counter-train_total_num)/validation_total_num*100))
# Then we print the results for this epoch:
print("Epoch {} of {} took {:.3f}s".format(epoch + 1, num_epochs, time.time() - start_time))
print(" training loss:\t\t{:.6f}".format(train_err / train_batches))
print(" validation loss:\t\t{:.6f}".format(val_err / val_batches))
print(" validation accuracy:\t\t{:.2f} %".format(val_acc / val_batches * 100))
# change current directory
os.chdir(dirpath)
# store parameters
print(" should store epoch {}".format(epoch+1))
pythonName,suffix = os.path.splitext(__file__)
param2store = lasagne.layers.get_all_param_values(network)
storename = pythonName+"_"+str((epoch+1))+"_accu="+str(val_acc / val_batches * 100)+".save"
with file(storename,'wb') as f:
cPickle.dump(param2store,f)
# change current directory
os.chdir(test_dirpath)
# After training, we compute and print the test error:
test_err = 0
test_acc = 0
test_batches = 0
for batch in loadArray(test_dirpath):
inputs, targets, batchNum = batch
err, acc = val_fn(inputs, targets)
test_err += err*batchNum
test_acc += acc*batchNum
test_batches += batchNum
print("Final results:")
print(" test loss:\t\t\t{:.6f}".format(test_err / test_batches))
print(" test accuracy:\t\t{:.2f} %".format(test_acc / test_batches * 100))
def test_lasagne_ctc():
import lasagne
from lasagne.layers import LSTMLayer, InputLayer, DenseLayer,\
NonlinearityLayer, ReshapeLayer, EmbeddingLayer, RecurrentLayer
import theano
import theano.tensor as T
import numpy as np
num_batch, input_seq_len = 10, 15
num_classes = 10
target_seq_len = 5
num_rnn_units = 50
input_seq_len += target_seq_len
def print_pred(y_hat):
blank_symbol = num_classes
res = []
for i, s in enumerate(y_hat):
if (s != blank_symbol) and (i == 0 or s != y_hat[i - 1]):
res += [s]
if len(res) > 0:
return "".join(map(str, list(res)))
else:
return "-" * target_seq_len
Y_hat = np.asarray(np.random.normal(
0, 1, (input_seq_len, num_batch, num_classes + 1)),
dtype=floatX)
Y = np.zeros((target_seq_len, num_batch), dtype='int64')
Y[25:, :] = 1
Y_hat_mask = np.ones((input_seq_len, num_batch), dtype=floatX)
Y_hat_mask[-5:] = 0
# default blank symbol is the highest class index (3 in this case)
Y_mask = np.asarray(np.ones_like(Y), dtype=floatX)
X = np.random.random((num_batch, input_seq_len)).astype('int32')
y = T.imatrix('phonemes')
x = T.imatrix() # batchsize, input_seq_len, features
# setup Lasagne Recurrent network
# The output from the network is shape
# a) output_lin_ctc is the activation before softmax (input_seq_len, batch_size, num_classes + 1)
# b) ouput_softmax is the output after softmax (batch_size, input_seq_len, num_classes + 1)
l_inp = InputLayer((num_batch, input_seq_len))
l_emb = EmbeddingLayer(l_inp,
input_size=num_classes + 1,
output_size=num_classes + 1,
W=np.identity(num_classes + 1).astype('float32'))
ini = lasagne.init.Uniform(0.1)
zero = lasagne.init.Constant(0.0)
cell = lasagne.init.Uniform(0.1)
l_rnn = LSTMLayer(l_emb,
num_units=num_rnn_units,
peepholes=True,
W_in_to_ingate=ini,
W_hid_to_ingate=ini,
b_ingate=zero,
W_in_to_forgetgate=ini,
W_hid_to_forgetgate=ini,
b_forgetgate=zero,
W_in_to_cell=ini,
W_hid_to_cell=ini,
b_cell=zero,
W_in_to_outgate=ini,
W_hid_to_outgate=ini,
b_outgate=zero,
cell_init=lasagne.init.Constant(0.),
hid_init=lasagne.init.Constant(0.),
W_cell_to_forgetgate=cell,
W_cell_to_ingate=cell,
W_cell_to_outgate=cell)
l_rnn_shp = ReshapeLayer(l_rnn, (num_batch * input_seq_len, num_rnn_units))
l_out = DenseLayer(l_rnn_shp,
num_units=num_classes + 1,
nonlinearity=lasagne.nonlinearities.identity) # + blank
l_out_shp = ReshapeLayer(l_out,
(num_batch, input_seq_len, num_classes + 1))
# dimshuffle to shape format (input_seq_len, batch_size, num_classes + 1)
#l_out_shp_ctc = lasagne.layers.DimshuffleLayer(l_out_shp, (1, 0, 2))
l_out_softmax = NonlinearityLayer(
l_out, nonlinearity=lasagne.nonlinearities.softmax)
l_out_softmax_shp = ReshapeLayer(
l_out_softmax, (num_batch, input_seq_len, num_classes + 1))
output_lin_ctc = lasagne.layers.get_output(l_out_shp, x)
output_softmax = lasagne.layers.get_output(l_out_softmax_shp, x)
all_params = l_rnn.get_params(trainable=True) # dont learn embeddingl
print all_params
###############
# GRADIENTS #
###############
# the CTC cross entropy between y and linear output network
pseudo_cost = ctc_cost.pseudo_cost(y, output_lin_ctc)
# calculate the gradients of the CTC wrt. linar output of network
pseudo_cost_grad = T.grad(pseudo_cost.sum() / num_batch, all_params)
true_cost = ctc_cost.cost(y, output_softmax)
cost = T.mean(true_cost)
sh_lr = theano.shared(lasagne.utils.floatX(0.01))
#updates = lasagne.updates.sgd(pseudo_cost_grad, all_params, learning_rate=sh_lr)
#updates = lasagne.updates.apply_nesterov_momentum(updates, all_params, momentum=0.9)
updates = lasagne.updates.rmsprop(pseudo_cost_grad,
all_params,
learning_rate=sh_lr)
train = theano.function(
[x, y], [output_lin_ctc, output_softmax, cost, pseudo_cost],
updates=updates)
# Create test dataset
num_samples = 1000
np.random.seed(1234)
# create simple dataset of format
# input [5,5,5,5,5,2,2,2,2,2,3,3,3,3,3,....,1,1,1,1]
# targets [5,2,3,...,1]
# etc...
input_lst, output_lst = [], []
for i in range(num_samples):
this_input = []
this_output = []
for j in range(target_seq_len):
this_class = np.random.randint(num_classes)
this_input += [this_class] * 3 + [num_classes]
this_output += [this_class]
this_input += (input_seq_len - len(this_input)) * [this_input[-1]]
input_lst.append(this_input)
output_lst.append(this_output)
print this_input, this_output
input_arr = np.concatenate([input_lst]).astype('int32')
y_arr = np.concatenate([output_lst]).astype('int32')
y_mask_arr = np.ones((num_batch, target_seq_len), dtype='float32')
input_mask_arr = np.ones((num_batch, input_seq_len), dtype='float32')
for nn in range(10000):
cost_lst = []
shuffle = np.random.permutation(num_samples)
for i in range(num_samples // num_batch):
idx = shuffle[i * num_batch:(i + 1) * num_batch]
_, output_softmax_val, cost, pseudo_cost_val = train(
input_arr[idx], y_arr[idx])
output_softmax_lst = output_softmax_val
labels_lst = y_arr[idx]
cost_lst += [cost]
#testing.assert_almost_equal(pseudo_cost, pseudo_cost_old, decimal=4)
#testing.assert_array_almost_equal(pseudo_cost_val, pseudo_cost_old_val)
if (nn + 1) % 200 == 0:
DECAY = 1.5
new_lr = lasagne.utils.floatX(sh_lr.get_value() / DECAY)
sh_lr.set_value(new_lr)
print "----------------------->NEW LR:", new_lr
print nn, "Mean cost:", np.mean(cost_lst)
if (nn + 1) % 4 == 0:
for jj in range(num_batch):
pred = print_pred(np.argmax(output_softmax_val[jj], axis=-1))
true = "".join(map(str, labels_lst[jj]))
pred += (target_seq_len - len(pred)) * " "
print pred, true
#recognizer = SpeechRecognizer(
# num_features=num_features, dims_bottom=[],
# dims_bidir=conf.dims_transition, dims_top=[num_classes],
# bidir_trans=GatedRecurrent, bottom_activation=None)
# ******************* output *******************
y_hat = recognizer.apply(x,x_m)
y_hat.name = 'outputs'
y_hat_softmax = NDimensionalSoftmax().apply(y_hat, extra_ndim = y_hat.ndim - 2)
y_hat_softmax.name = 'outputs_softmax'
# there is a cost function for monitoring and for training, because one is more stable to compute
# gradients and seems also to be more memory efficient, but does not compute the true cost.
if conf.task=='CTC':
cost_train = ctc.pseudo_cost(y, y_hat, y_m, x_m).mean()
cost_train.name = "cost_train"
cost_monitor = ctc.cost(y, y_hat_softmax, y_m, x_m).mean()
cost_monitor.name = "cost_monitor"
elif conf.task=='framewise':
cost_train = categorical_crossentropy_batch().apply(y_hat_softmax, y, x_m)
cost_train.name='cost'
cost_monitor = cost_train
else:
raise ValueError, conf.task
recognizer.initialize()
cg = ComputationGraph([cost_train, y_hat, x_m, y, y_m])
l_out_softmax = NonlinearityLayer(l_out, nonlinearity=soft)
l_out_softmax_shp = ReshapeLayer(l_out_softmax, (batchsize, seqlen, num_classes))
output_lin_ctc = L.get_output(l_out_shp)
network_output = L.get_output(l_out_softmax_shp)
all_params = L.get_all_params(l_rnn_2, trainable=True)
# ## Costs, Gradients & Training Functions
# Cost functions
target_values = T.imatrix('target_output')
input_values = T.imatrix()
### Gradients ###
# pseudo costs - ctc cross entropy b/n targets and linear output - used in training
pseudo_cost = ctc_cost.pseudo_cost(target_values, output_lin_ctc)
pseudo_cost_grad = T.grad(pseudo_cost.sum() / batchsize, all_params)
pseudo_cost = pseudo_cost.mean()
# true costs
cost = ctc_cost.cost(target_values, network_output)
cost = cost.mean()
# Compute SGD updates for training
print("Computing updates ...")
updates = lasagne.updates.rmsprop(pseudo_cost_grad, all_params, LEARNING_RATE)
# Theano functions for training and computing cost
print("Compiling functions ...")
train = theano.function(
[l_in.input_var, target_values], [cost, pseudo_cost, network_output], updates=updates)
def test_lasagne_ctc():
import lasagne
from lasagne.layers import LSTMLayer, InputLayer, DenseLayer,\
NonlinearityLayer, ReshapeLayer, EmbeddingLayer, RecurrentLayer
import theano
import theano.tensor as T
import numpy as np
num_batch, input_seq_len = 10, 15
num_classes = 10
target_seq_len = 5
num_rnn_units = 50
input_seq_len += target_seq_len
def print_pred(y_hat):
blank_symbol = num_classes
res = []
for i, s in enumerate(y_hat):
if (s != blank_symbol) and (i == 0 or s != y_hat[i - 1]):
res += [s]
if len(res) > 0:
return "".join(map(str, list(res)))
else:
return "-"*target_seq_len
Y_hat = np.asarray(np.random.normal(
0, 1, (input_seq_len, num_batch, num_classes + 1)), dtype=floatX)
Y = np.zeros((target_seq_len, num_batch), dtype='int64')
Y[25:, :] = 1
Y_hat_mask = np.ones((input_seq_len, num_batch), dtype=floatX)
Y_hat_mask[-5:] = 0
# default blank symbol is the highest class index (3 in this case)
Y_mask = np.asarray(np.ones_like(Y), dtype=floatX)
X = np.random.random(
(num_batch, input_seq_len)).astype('int32')
y = T.imatrix('phonemes')
x = T.imatrix() # batchsize, input_seq_len, features
# setup Lasagne Recurrent network
# The output from the network is shape
# a) output_lin_ctc is the activation before softmax (input_seq_len, batch_size, num_classes + 1)
# b) ouput_softmax is the output after softmax (batch_size, input_seq_len, num_classes + 1)
l_inp = InputLayer((num_batch, input_seq_len))
l_emb = EmbeddingLayer(l_inp,
input_size=num_classes+1,
output_size=num_classes+1,
W=np.identity(num_classes+1).astype('float32'))
ini = lasagne.init.Uniform(0.1)
zero = lasagne.init.Constant(0.0)
cell = lasagne.init.Uniform(0.1)
l_rnn = LSTMLayer(l_emb,
num_units=num_rnn_units,
peepholes=True,
W_in_to_ingate=ini,
W_hid_to_ingate=ini,
b_ingate=zero,
W_in_to_forgetgate=ini,
W_hid_to_forgetgate=ini,
b_forgetgate=zero,
W_in_to_cell=ini,
W_hid_to_cell=ini,
b_cell=zero,
W_in_to_outgate=ini,
W_hid_to_outgate=ini,
b_outgate=zero,
cell_init=lasagne.init.Constant(0.),
hid_init=lasagne.init.Constant(0.),
W_cell_to_forgetgate=cell,
W_cell_to_ingate=cell,
W_cell_to_outgate=cell)
l_rnn_shp = ReshapeLayer(l_rnn, (num_batch*input_seq_len, num_rnn_units))
l_out = DenseLayer(l_rnn_shp, num_units=num_classes+1,
nonlinearity=lasagne.nonlinearities.identity) # + blank
l_out_shp = ReshapeLayer(l_out, (num_batch, input_seq_len, num_classes+1))
# dimshuffle to shape format (input_seq_len, batch_size, num_classes + 1)
#l_out_shp_ctc = lasagne.layers.DimshuffleLayer(l_out_shp, (1, 0, 2))
l_out_softmax = NonlinearityLayer(
l_out, nonlinearity=lasagne.nonlinearities.softmax)
l_out_softmax_shp = ReshapeLayer(
l_out_softmax, (num_batch, input_seq_len, num_classes+1))
output_lin_ctc = lasagne.layers.get_output(l_out_shp, x)
output_softmax = lasagne.layers.get_output(l_out_softmax_shp, x)
all_params = l_rnn.get_params(trainable=True) # dont learn embeddingl
print all_params
###############
# GRADIENTS #
###############
# the CTC cross entropy between y and linear output network
pseudo_cost = ctc_cost.pseudo_cost(
y, output_lin_ctc)
# calculate the gradients of the CTC wrt. linar output of network
pseudo_cost_grad = T.grad(pseudo_cost.sum() / num_batch, all_params)
true_cost = ctc_cost.cost(y, output_softmax)
cost = T.mean(true_cost)
sh_lr = theano.shared(lasagne.utils.floatX(0.01))
#updates = lasagne.updates.sgd(pseudo_cost_grad, all_params, learning_rate=sh_lr)
#updates = lasagne.updates.apply_nesterov_momentum(updates, all_params, momentum=0.9)
updates = lasagne.updates.rmsprop(pseudo_cost_grad, all_params, learning_rate=sh_lr)
train = theano.function([x, y],
[output_lin_ctc, output_softmax, cost, pseudo_cost],
updates=updates)
# Create test dataset
num_samples = 1000
np.random.seed(1234)
# create simple dataset of format
# input [5,5,5,5,5,2,2,2,2,2,3,3,3,3,3,....,1,1,1,1]
# targets [5,2,3,...,1]
# etc...
input_lst, output_lst = [], []
for i in range(num_samples):
this_input = []
this_output = []
for j in range(target_seq_len):
this_class = np.random.randint(num_classes)
this_input += [this_class]*3 + [num_classes]
this_output += [this_class]
this_input += (input_seq_len - len(this_input))*[this_input[-1]]
input_lst.append(this_input)
output_lst.append(this_output)
print this_input, this_output
input_arr = np.concatenate([input_lst]).astype('int32')
y_arr = np.concatenate([output_lst]).astype('int32')
y_mask_arr = np.ones((num_batch, target_seq_len), dtype='float32')
input_mask_arr = np.ones((num_batch, input_seq_len), dtype='float32')
for nn in range(10000):
cost_lst = []
shuffle = np.random.permutation(num_samples)
for i in range(num_samples//num_batch):
idx = shuffle[i*num_batch:(i+1)*num_batch]
_, output_softmax_val, cost, pseudo_cost_val = train(
input_arr[idx],
y_arr[idx])
output_softmax_lst = output_softmax_val
labels_lst = y_arr[idx]
cost_lst += [cost]
#testing.assert_almost_equal(pseudo_cost, pseudo_cost_old, decimal=4)
#testing.assert_array_almost_equal(pseudo_cost_val, pseudo_cost_old_val)
if (nn+1) % 200 == 0:
DECAY = 1.5
new_lr = lasagne.utils.floatX(sh_lr.get_value() / DECAY)
sh_lr.set_value(new_lr)
print "----------------------->NEW LR:", new_lr
print nn, "Mean cost:", np.mean(cost_lst)
if (nn+1) % 4 == 0:
for jj in range(num_batch):
pred = print_pred(np.argmax(output_softmax_val[jj], axis=-1))
true = "".join(map(str, labels_lst[jj]))
pred += (target_seq_len-len(pred)) * " "
print pred, true