def testRequiredFields(self):
required = SampleAttribute.required_fields()
self.assertEqual(type(required), tuple,
"required_fields() returns a tuple.")
self.assertTrue(len(required) > 0,
"required_field() did not return empty value.")
def testRequiredFields(self):
""" Test the required_fields() static method. """
required = SampleAttribute.required_fields()
self.assertEqual(type(required), tuple,
"required_fields() returns a tuple.")
self.assertTrue(
len(required) > 0, "required_field() did not return empty value.")
import json
import logging
from cutlass import SampleAttribute
from cutlass import iHMPSession
from pprint import pprint
import tempfile
import sys
username = "******"
password = "******"
session = iHMPSession(username, password)
print("Required fields: ")
print(SampleAttribute.required_fields())
attrib = SampleAttribute()
attrib.fecalcal = "test fecalcal"
attrib.study = "prediabetes"
# SampleAttributes are 'associated_with' samples
attrib.links = { "associated_with": [ "610a4911a5ca67de12cdc1e4b4011876" ] }
attrib.tags = [ "sample_attr", "ihmp" ]
attrib.add_tag("sample")
print(attrib.to_json(indent=2))
if attrib.is_valid():
root = logging.getLogger()
root.setLevel(logging.DEBUG)
ch = logging.StreamHandler(sys.stdout)
ch.setLevel(logging.DEBUG)
formatter = logging.Formatter(
'%(asctime)s - %(name)s - %(levelname)s - %(message)s')
ch.setFormatter(formatter)
root.addHandler(ch)
set_logging()
session = iHMPSession(username, password)
print("Required fields: ")
print(SampleAttribute.required_fields())
attrib = SampleAttribute()
attrib.fecalcal = "test fecalcal"
attrib.study = "prediabetes"
# SampleAttributes are 'associated_with' samples
attrib.links = {"associated_with": ["610a4911a5ca67de12cdc1e4b4011876"]}
attrib.tags = ["sample_attr", "ihmp"]
attrib.add_tag("sample")
attrib.sample_desc = "DNA: mom-vaginal"
attrib.sample_type = "BC1D"
attrib.subproject = "earlyPregStudy"