def history(request, pk):
try:
model = DesignModel.objects.get(user=UserProfile.get_profile(
request.user),
pk=pk)
revisions = model.revisions.all()
except ObjectDoesNotExist:
return render_queryset_to_response_error(request,
error=404,
msg="Model not found")
entries = []
from itertools import groupby
for k, v in groupby(revisions, key=lambda x: x.date.date()):
v = list(v)[::-1]
for vv in v:
try:
vv.changes = json.dumps(vv.changes["changes"])
except KeyError:
vv.changes = json.dumps({})
entries.append([k, list(v)[::-1]])
data = {"model": model, "revisions": entries}
return render_queryset_to_response(request,
template="cyanodesign/history.html",
data=data)
def map_view(request, map_id):
export = "export_button" in request.POST
items, enzymes, metabolites = request_extract(request)
map_data = get_reaction_map(map_id, enzymes, metabolites, export)
if export:
map_data = """<?xml version="1.0" encoding="UTF-8" standalone="no"?>""" + map_data
import wand.image
with wand.image.Image(blob=map_data, format="svg") as image:
png_image = image.make_blob("png")
response = HttpResponse(png_image, content_type='image/png')
response['Content-Disposition'] = 'attachment; filename={}.png'.format(map_id)
return response
return render_queryset_to_response(
request=request,
template="kegg/map.html",
data={
'map_id': map_id,
'map_data': map_data,
'enzymes': enzymes,
'metabolites': metabolites,
'items': items,
'queries': [] if request.user.is_anonymous() else models.Query.objects.filter(user=request.user.profile),
'is_anonymous': request.user.is_anonymous()
}
)
def design(request, pk):
try:
item = DesignModel.objects.get(user=UserProfile.get_profile(
request.user),
pk=pk)
current = item.get_latest_revision()
except ObjectDoesNotExist:
return render_queryset_to_response_error(request,
error=404,
msg="Model not found")
try:
revision = request.GET["revision"]
try:
revision = Revision.objects.get(model=item, pk=revision)
except ObjectDoesNotExist:
return render_queryset_to_response_error(request,
error=404,
msg="Revision not found")
except KeyError:
revision = current
data = {
"pk": pk,
"name": item.name,
"revision": None if current.pk == revision.pk else revision,
"save_form": SaveModelForm(None),
"saveas_form": SaveModelAsForm(None)
}
return render_queryset_to_response(request,
template="cyanodesign/design.html",
data=data)
def design(request, pk):
try:
item = DesignModel.objects.get(user=UserProfile.get_profile(request.user), pk=pk)
current = item.get_latest_revision()
except ObjectDoesNotExist:
return render_queryset_to_response_error(request, error=404, msg="Model not found")
try:
revision = request.GET["revision"]
try:
revision = Revision.objects.get(model=item, pk=revision)
except ObjectDoesNotExist:
return render_queryset_to_response_error(request, error=404, msg="Revision not found")
except KeyError:
revision = current
data = {
"pk": pk,
"name": item.name,
"revision": None if current.pk == revision.pk else revision,
"save_form": SaveModelForm(None),
"saveas_form": SaveModelAsForm(None)
}
return render_queryset_to_response(request, template="cyanodesign/design.html", data=data)
def map_view(request, map_id):
export = "export_button" in request.POST
items, enzymes, metabolites = request_extract(request)
map_data = get_reaction_map(map_id, enzymes, metabolites, export)
if export:
map_data = """<?xml version="1.0" encoding="UTF-8" standalone="no"?>""" + map_data
import wand.image
with wand.image.Image(blob=map_data.encode("utf-8"), format="svg") as image:
png_image = image.make_blob("png")
response = HttpResponse(png_image, content_type='image/png')
response['Content-Disposition'] = 'attachment; filename={}.png'.format(map_id)
return response
return render_queryset_to_response(
request=request,
template="kegg/map.html",
data={
'map_id': map_id,
'map_data': map_data,
'enzymes': enzymes,
'metabolites': metabolites,
'items': items,
'queries': [] if request.user.is_anonymous() else models.Query.objects.filter(user=request.user.profile),
'is_anonymous': request.user.is_anonymous()
}
)
def index(request):
upload_form = UploadModelForm(None)
templates = DesignTemplate.objects.values_list("pk", "name")
template_form = ModelFromTemplateForm(choices=templates)
models = DesignModel.objects.filter(user=UserProfile.get_profile(request.user))
return render_queryset_to_response(
request,
template="cyanodesign/list.html",
queryset=models,
data={'upload_form': upload_form, "template_form": template_form}
)
def index(request):
upload_form = UploadModelForm(None)
templates = DesignTemplate.objects.values_list("pk", "name")
template_form = ModelFromTemplateForm(choices=templates)
models = DesignModel.objects.filter(
user=UserProfile.get_profile(request.user))
return render_queryset_to_response(request,
template="cyanodesign/list.html",
queryset=models,
data={
'upload_form': upload_form,
"template_form": template_form
})
def index(request, legacy=None):
"""
"""
data = format_output(request)
if "export_button" in request.POST:
t = loader.get_template('boehringer/boehringer_svg.html')
c = RequestContext(request, data)
response = HttpResponse(t.render(c), content_type='image/svg+xml')
response['Content-Disposition'] = 'attachment; filename=boehringer.svg'
return response
if legacy:
return render_to_response("boehringer/legacy.html",
data,
context_instance=RequestContext(request))
else:
return render_queryset_to_response(request,
data=data,
template="boehringer/index.html")
def index(request):
items, enzymes, metabolites = request_extract(request)
ecs = list(map(lambda x: x[0], enzymes))
metas = list(map(lambda x: x[0], metabolites))
query = None
if len(metas) > 0:
# reduce magic via https://stackoverflow.com/questions/7088173/
query = reduce(lambda x, y: x | y, [Q(name__icontains=word) for word in metas])
query |= reduce(lambda x, y: x | y, [Q(title__icontains=word) for word in metas])
if len(ecs) > 0:
if query is None:
query = Q(ec_numbers__name__in=ecs)
else:
query |= Q(ec_numbers__name__in=ecs)
if query is not None:
kegg_maps = models.Map.objects.filter(query).distinct()
else:
kegg_maps = models.Map.objects.all()
overview = filter(lambda x: x.overview, kegg_maps)
other = filter(lambda x: not x.overview, kegg_maps)
return render_queryset_to_response(
request=request,
template="kegg/index.html",
data={
'overview_maps': overview,
'other_maps': other,
'items': items,
'queries': [] if request.user.is_anonymous() else models.Query.objects.filter(user=request.user.profile),
'is_anonymous': request.user.is_anonymous()
}
)
def index(request):
items, enzymes, metabolites = request_extract(request)
ecs = list(map(lambda x: x[0], enzymes))
metas = list(map(lambda x: x[0], metabolites))
query = None
if len(metas) > 0:
# reduce magic via https://stackoverflow.com/questions/7088173/
query = reduce(lambda x, y: x | y, [Q(name__icontains=word) for word in metas])
query |= reduce(lambda x, y: x | y, [Q(title__icontains=word) for word in metas])
if len(ecs) > 0:
if query is None:
query = Q(ec_numbers__name__in=ecs)
else:
query |= Q(ec_numbers__name__in=ecs)
if query is not None:
kegg_maps = models.Map.objects.filter(query).distinct()
else:
kegg_maps = models.Map.objects.all()
overview = filter(lambda x: x.overview, kegg_maps)
other = filter(lambda x: not x.overview, kegg_maps)
return render_queryset_to_response(
request=request,
template="kegg/index.html",
data={
'overview_maps': overview,
'other_maps': other,
'items': items,
'queries': [] if request.user.is_anonymous() else models.Query.objects.filter(user=request.user.profile),
'is_anonymous': request.user.is_anonymous()
}
)
def history(request, pk):
try:
model = DesignModel.objects.get(user=UserProfile.get_profile(request.user), pk=pk)
revisions = model.revisions.all()
except ObjectDoesNotExist:
return render_queryset_to_response_error(request, error=404, msg="Model not found")
entries = []
from itertools import groupby
for k,v in groupby(revisions, key=lambda x: x.date.date()):
v = list(v)[::-1]
for vv in v:
try:
vv.changes = json.dumps(vv.changes["changes"])
except KeyError:
vv.changes = json.dumps({})
entries.append([k, list(v)[::-1]])
data = {"model": model, "revisions": entries}
return render_queryset_to_response(request, template="cyanodesign/history.html", data=data)
def index(request, legacy=None):
"""
"""
data = format_output(request)
if "export_button" in request.POST:
t = loader.get_template('boehringer/boehringer_svg.html')
c = RequestContext(request, data)
response = HttpResponse(t.render(c), content_type='image/svg+xml')
response['Content-Disposition'] = 'attachment; filename=boehringer.svg'
return response
if legacy:
return render_to_response(
"boehringer/legacy.html",
data,
context_instance=RequestContext(request))
else:
return render_queryset_to_response(
request,
data=data,
template="boehringer/index.html"
)
