def __init__(self, fuchia_database):
super(ReceivedArvDuringPeriod, self).__init__(fuchia_database)
self.a = PreviousActiveList(self.fuchia_database)
self.b = ArvStartedDuringPeriod(self.fuchia_database)
self.c = ArvIncomingTransferPatientsDuringPeriod(self.fuchia_database)
self.d = ArvLostBackPatients(self.fuchia_database)
self.e = ArvRestartedDuringPeriod(self.fuchia_database)
def filter_patients_dataframe(self, limit_date, start_date=None,
include_null_dates=False):
tb_entry = TbVihPositive(self.fuchia_database)
arv_started = ArvStartedDuringPeriod(self.fuchia_database)
return (tb_entry & arv_started).get_filtered_patients_dataframe(
limit_date,
start_date=start_date,
include_null_dates=include_null_dates
), None
def filter_patients_dataframe(self,
limit_date,
start_date=None,
include_null_dates=False):
had_cd4_inf_200 = HadCd4Inf200DuringPeriod(self.fuchia_database)
arv_started = ArvStartedDuringPeriod(self.fuchia_database)
return (had_cd4_inf_200 & arv_started).get_filtered_patients_dataframe(
limit_date,
start_date=start_date,
include_null_dates=include_null_dates), None
def filter_patients_dataframe(self,
limit_date,
start_date=None,
include_null_dates=False):
cv_12_months = HadViralLoad12Inf1000(self.fuchia_database)
cv_12_months_patients = cv_12_months.get_filtered_patients_dataframe(
limit_date,
start_date=start_date,
include_null_dates=include_null_dates)
p_limit = limit_date - relativedelta(months=12)
p_start = start_date - relativedelta(months=12)
p_limit = getLastDayOfPeriod(p_limit.month, p_limit.year)
p_start = getFirstDayOfPeriod(p_start.month, p_start.year)
arv_started = ArvStartedDuringPeriod(
self.fuchia_database).get_filtered_patients_dataframe(
p_limit,
start_date=p_start,
include_null_dates=include_null_dates)
idx = cv_12_months_patients.index.intersection(arv_started.index)
return arv_started.loc[idx], None
def filter_patients_dataframe(self,
limit_date,
start_date=None,
include_null_dates=False):
active_list = ActiveList(
self.fuchia_database).get_filtered_patients_dataframe(
limit_date,
start_date=start_date,
include_null_dates=include_null_dates)
p_limit = limit_date - relativedelta(months=self.retention_duration)
p_start = start_date - relativedelta(months=self.retention_duration)
p_limit = getLastDayOfPeriod(p_limit.month, p_limit.year)
p_start = getFirstDayOfPeriod(p_start.month, p_start.year)
arv_started = ArvStartedDuringPeriod(
self.fuchia_database).get_filtered_patients_dataframe(
p_limit,
start_date=p_start,
include_null_dates=include_null_dates)
intersection = active_list.index.intersection(arv_started.index)
return active_list.loc[intersection], None
class ReceivedArvDuringPeriod(PatientIndicator):
def under_arv(self):
return False
@classmethod
def get_key(cls):
return "ARV_RECEIVED"
@classmethod
def get_display_label(cls):
return "Ayant bénéficié du TARV"
def __init__(self, fuchia_database):
super(ReceivedArvDuringPeriod, self).__init__(fuchia_database)
self.a = PreviousActiveList(self.fuchia_database)
self.b = ArvStartedDuringPeriod(self.fuchia_database)
self.c = ArvIncomingTransferPatientsDuringPeriod(self.fuchia_database)
self.d = ArvLostBackPatients(self.fuchia_database)
self.e = ArvRestartedDuringPeriod(self.fuchia_database)
def filter_patients_dataframe(self,
limit_date,
start_date=None,
include_null_dates=False):
patients = self.filter_patients_by_category(
limit_date, start_date=None, include_null_dates=include_null_dates)
a = self.a.get_filtered_patients_dataframe(
limit_date,
start_date=start_date,
include_null_dates=include_null_dates).index
b = self.b.get_filtered_patients_dataframe(
limit_date,
start_date=start_date,
include_null_dates=include_null_dates).index
c = self.c.get_filtered_patients_dataframe(
limit_date,
start_date=start_date,
include_null_dates=include_null_dates).index
d = self.d.get_filtered_patients_dataframe(
limit_date,
start_date=start_date,
include_null_dates=include_null_dates).index
e = self.e.get_filtered_patients_dataframe(
limit_date,
start_date=start_date,
include_null_dates=include_null_dates).index
idx = a.union(b).union(c).union(d).union(e)
return patients.loc[idx], None
def get_value(self,
limit_date,
start_date=None,
gender=None,
age_min=None,
age_max=None,
age_is_null=False,
include_null_dates=False,
post_filter_index=None):
return (self.a + self.b + self.c + self.d + self.e).get_value(
limit_date,
start_date=start_date,
gender=gender,
age_min=age_min,
age_max=age_max,
age_is_null=age_is_null,
include_null_dates=include_null_dates,
post_filter_index=post_filter_index)