def _add_single_block(self, Block) :
"""Adds all the data in a DataBlock Object to the Writer such that it
can be written to a fits file eventually."""
Block.verify()
# Merge the histories
if self.first_block_added :
self.history = db.History(Block.history)
else :
self.history = db.merge_histories(self.history, Block)
# Some dimensioning and such
dims = tuple(Block.dims)
n_records = dims[0]*dims[1]*dims[2]
block_shape = dims[0:-1]
# For now automatically determine the format for the data field.
data_format = str(dims[-1]) + 'E'
if self.first_block_added :
self.data_format = data_format
elif self.data_format != data_format :
raise ce.DataError('Data shape miss match: freq axis must be same'
' length for all DataBlocks added to Wirter.')
# Copy the reshaped data from the DataBlock
data = sp.array(ma.filled(Block.data, float('nan')))
if self.first_block_added :
self.data = data.reshape((n_records, dims[3]))
else :
self.data = sp.concatenate((self.data, data.reshape((
n_records, dims[3]))), axis=0)
# Now get all stored fields for writing out.
for field, axes in Block.field_axes.iteritems() :
# Need to expand the field data to the full ntimes x npol x ncal
# length (with lots of repitition). We will use np broadcasting.
broadcast_shape = [1,1,1]
for axis in axes :
axis_ind = list(Block.axes).index(axis)
broadcast_shape[axis_ind] = dims[axis_ind]
# Allowcate memory for the new full field.
data_type = Block.field[field].dtype
field_data = sp.empty(block_shape, dtype=data_type)
# Copy data with the entries, expanding dummy axes.
field_data[:,:,:] = sp.reshape(Block.field[field],
broadcast_shape)
if self.first_block_added :
self.field[field] = field_data.reshape(n_records)
self.formats[field] = Block.field_formats[field]
else :
self.field[field] = sp.concatenate((self.field[field],
field_data.reshape(n_records)), axis=0)
if self.formats[field] != Block.field_formats[field] :
raise ce.DataError('Format miss match in added data blocks'
' and field: ' + field)
self.first_block_added = False
def _add_single_block(self, Block) :
"""Adds all the data in a DataBlock Object to the Writer such that it
can be written to a fits file eventually."""
Block.verify()
# Merge the histories
if self.first_block_added :
self.history = db.History(Block.history)
else :
self.history = db.merge_histories(self.history, Block)
# Some dimensioning and such
dims = tuple(Block.dims)
n_records = dims[0]*dims[1]*dims[2]
block_shape = dims[0:-1]
# For now automatically determine the format for the data field.
data_format = str(dims[-1]) + 'E'
if self.first_block_added :
self.data_format = data_format
elif self.data_format != data_format :
raise ce.DataError('Data shape miss match: freq axis must be same'
' length for all DataBlocks added to Wirter.')
# Copy the reshaped data from the DataBlock
data = sp.array(ma.filled(Block.data, float('nan')))
if self.first_block_added :
self.data = data.reshape((n_records, dims[3]))
else :
self.data = sp.concatenate((self.data, data.reshape((
n_records, dims[3]))), axis=0)
# Now get all stored fields for writing out.
for field, axes in Block.field_axes.iteritems() :
# Need to expand the field data to the full ntimes x npol x ncal
# length (with lots of repitition). We will use np broadcasting.
broadcast_shape = [1,1,1]
for axis in axes :
axis_ind = list(Block.axes).index(axis)
broadcast_shape[axis_ind] = dims[axis_ind]
# Allowcate memory for the new full field.
data_type = Block.field[field].dtype
field_data = sp.empty(block_shape, dtype=data_type)
# Copy data with the entries, expanding dummy axes.
field_data[:,:,:] = sp.reshape(Block.field[field],
broadcast_shape)
if self.first_block_added :
self.field[field] = field_data.reshape(n_records)
self.formats[field] = Block.field_formats[field]
else :
self.field[field] = sp.concatenate((self.field[field],
field_data.reshape(n_records)), axis=0)
if self.formats[field] != Block.field_formats[field] :
raise ce.DataError('Format miss match in added data blocks'
' and field: ' + field)
self.first_block_added = False
def test_merge_multiple_histories(self) :
entry1 = 'Read from file.'
entry2 = 'Saved to file.'
DBs = ()
n = 10
for ii in range(n) :
tempDB = db.DataBlock()
tempDB.add_history(entry1, 'filename: ' + str(ii))
tempDB.add_history(entry2, 'saved filename not iterated')
DBs = DBs + (tempDB, )
merged = db.merge_histories(*DBs)
self.assertEqual(len(merged['000: '+entry1]), n)
self.assertEqual(len(merged['001: '+entry2]), 1)
def test_merge_multiple_histories(self):
entry1 = 'Read from file.'
entry2 = 'Saved to file.'
DBs = ()
n = 10
for ii in range(n):
tempDB = db.DataBlock()
tempDB.add_history(entry1, 'filename: ' + str(ii))
tempDB.add_history(entry2, 'saved filename not iterated')
DBs = DBs + (tempDB, )
merged = db.merge_histories(*DBs)
self.assertEqual(len(merged['000: ' + entry1]), n)
self.assertEqual(len(merged['001: ' + entry2]), 1)
def test_merge_histories(self) :
# Basic tests
self.TestDB.add_history(self.hist_str, self.hist_detail)
SecondDB = db.DataBlock()
second_details = ('second file name', )
SecondDB.add_history(self.hist_str, second_details)
merged = db.merge_histories(self.TestDB, SecondDB)
self.assertEqual(len(merged.keys()), 1)
self.assertTrue(second_details[0] in merged['000: '+self.hist_str])
self.assertTrue(self.hist_detail[0] in merged['000: '+self.hist_str])
self.assertEqual(len(merged['000: '+self.hist_str]), 3)
# Enforce matching.
ThirdDB = db.DataBlock()
ThirdDB.add_history(self.hist_str, self.hist_detail)
ThirdDB.add_history('Read from file.', self.hist_detail)
self.assertRaises(ce.DataError, db.merge_histories, SecondDB, ThirdDB)
def test_merge_histories(self):
# Basic tests
self.TestDB.add_history(self.hist_str, self.hist_detail)
SecondDB = db.DataBlock()
second_details = ('second file name', )
SecondDB.add_history(self.hist_str, second_details)
merged = db.merge_histories(self.TestDB, SecondDB)
self.assertEqual(len(merged.keys()), 1)
self.assertTrue(second_details[0] in merged['000: ' + self.hist_str])
self.assertTrue(self.hist_detail[0] in merged['000: ' + self.hist_str])
self.assertEqual(len(merged['000: ' + self.hist_str]), 3)
# Enforce matching.
ThirdDB = db.DataBlock()
ThirdDB.add_history(self.hist_str, self.hist_detail)
ThirdDB.add_history('Read from file.', self.hist_detail)
self.assertRaises(ce.DataError, db.merge_histories, SecondDB, ThirdDB)