def dump_debug_data():
train_data_file_name = '/media/dhl/Data/el/vec_rep/wiki_train_word_vec_indices_wiki50.td'
entity_rep_file_name = '/media/dhl/Data/el/vec_rep/' + \
'wid_entity_rep_wiki50_indices_with_keywords_fixed_len_10kw.bin'
# entity_rep_file_name = '/media/dhl/Data/el/vec_rep/' + \
# 'wid_entity_rep_wiki50_indices.bin'
# wid_idx_dict, entity_vecs = data_load.load_entities_indices(
# entity_rep_file_name, max_num_entity_words, entity_pad_len)
global entity_rep_len
wid_idx_dict, entity_vecs, entity_rep_len = data_load.load_index_vec_of_entities_fixed_len(
entity_rep_file_name)
f_train = open(train_data_file_name, 'rb')
for i in xrange(143):
data_load.skip_training_sample(f_train, 50000)
if i % 40 == 0:
print i
print 'skipped'
cur_train_contexts, cur_train_indices = data_load.load_training_samples(f_train,
training_part_size,
wid_idx_dict,
sentence_len,
sentence_pad_len)
f_debug = open('debug_data_vlen.bin', 'wb')
cPickle.dump([cur_train_contexts, cur_train_indices], f_debug)
f_debug.close()
def dump_debug_data():
train_data_file_name = '/media/dhl/Data/el/vec_rep/wiki_train_word_vec_indices_wiki50.td'
entity_rep_file_name = '/media/dhl/Data/el/vec_rep/' + \
'wid_entity_rep_wiki50_indices_with_keywords_fixed_len_10kw.bin'
# entity_rep_file_name = '/media/dhl/Data/el/vec_rep/' + \
# 'wid_entity_rep_wiki50_indices.bin'
# wid_idx_dict, entity_vecs = data_load.load_entities_indices(
# entity_rep_file_name, max_num_entity_words, entity_pad_len)
global entity_rep_len
wid_idx_dict, entity_vecs, entity_rep_len = data_load.load_index_vec_of_entities_fixed_len(
entity_rep_file_name)
f_train = open(train_data_file_name, 'rb')
for i in xrange(143):
data_load.skip_training_sample(f_train, 50000)
if i % 40 == 0:
print i
print 'skipped'
cur_train_contexts, cur_train_indices = data_load.load_training_samples(
f_train, training_part_size, wid_idx_dict, sentence_len,
sentence_pad_len)
f_debug = open('debug_data_vlen.bin', 'wb')
cPickle.dump([cur_train_contexts, cur_train_indices], f_debug)
f_debug.close()
def train_cnn_for_el(train_data_file_name,
val_data_file_name,
num_val_candidates,
test_data_file_name,
num_test_candidates,
sentence_len, word_vec_len,
all_words, # first row of all_words should be a non-existing word
wid_idx_dict,
entity_vecs,
entity_side_cnn=False,
gold_as_first_candidate=False,
skip_width_loading=40, # skip width while loading samples
n_epochs=25,
batch_size=50,
filter_hs=def_filter_hs,
num_feature_maps=100,
lr_decay=0.9,
sqr_norm_lim=9,
hidden_out_len=50,
training_part_size=50000,
num_train_candidates=2):
full_sentence_len = sentence_len + 2 * sentence_pad_len
rng = np.random.RandomState(3435)
print 'making entity_vecs...', len(entity_vecs)
if entity_side_cnn:
shared_entity_vecs = theano.shared(value=np.asarray(entity_vecs, dtype="int32"),
name='entity_vecs', borrow=True)
else:
shared_entity_vecs = theano.shared(value=np.asarray(entity_vecs, dtype=theano.config.floatX),
name='entity_vecs', borrow=True)
print 'making shared_words...', len(all_words)
shared_words = theano.shared(value=np.asarray(all_words, dtype=theano.config.floatX),
name='shared_words', borrow=True)
print 'done'
val_contexts, val_indices = data_load.load_samples_full(val_data_file_name, wid_idx_dict, sentence_len,
sentence_pad_len,
skip_width=skip_width_loading,
num_candidates=num_val_candidates)
num_val_batches = len(val_contexts) / batch_size
print num_val_batches, 'validation batches'
print len(val_indices[0]), 'candidates per mention'
val_contexts = T.cast(to_theano_shared(val_contexts), 'int32')
val_indices = T.cast(to_theano_shared(val_indices), 'int32')
test_contexts, test_indices = data_load.load_samples_full(test_data_file_name, wid_idx_dict, sentence_len,
sentence_pad_len,
skip_width=skip_width_loading,
num_candidates=num_test_candidates)
num_test_batches = len(test_contexts) / batch_size
print num_test_batches, 'test batches'
print len(test_indices[0]), 'candidates per mention'
test_contexts = T.cast(to_theano_shared(test_contexts), 'int32')
test_indices = T.cast(to_theano_shared(test_indices), 'int32')
if gold_as_first_candidate:
gold_labels = theano.shared(value=np.zeros(batch_size,
dtype='int32'),
borrow=True)
else:
gold_labels = theano.shared(value=np.ones(batch_size,
dtype='int32'),
borrow=True)
x = T.imatrix('x')
entities = T.imatrix('entities')
sentence_cnn0 = SentenceCNN(x, shared_words, full_sentence_len, word_vec_len, filter_hs, num_feature_maps,
batch_size,
hidden_out_len, rng)
mc = sentence_cnn0.output # mention contexts
unit_mc = mc / T.sqrt(T.maximum(T.sum(T.sqr(mc), 1), 0.0001)).dimshuffle(0, 'x')
batch_entity_vecs = shared_entity_vecs[entities]
if entity_side_cnn:
loss, correct_rate, entity_side_params = get_training_variables_with_entity_side_cnn(batch_entity_vecs,
shared_words,
word_vec_len, batch_size,
hidden_out_len, unit_mc,
num_train_candidates,
num_val_candidates,
gold_labels, rng)
else:
loss, correct_rate, entity_side_params = get_training_variables_no_entity_side_cnn(batch_entity_vecs,
len(entity_vecs[0]),
hidden_out_len,
unit_mc,
gold_labels, rng)
# params = matcher0.params + entity_side_params
# for conv_layer in conv_layers:
# params += conv_layer.params
# params = sentence_cnn0.params + matcher1.params
# params = sentence_cnn0.params + sentence_cnn1_train.params
params = sentence_cnn0.params + entity_side_params
grad_updates = sgd_updates_adadelta(params, loss, lr_decay, 1e-6, sqr_norm_lim)
index = T.lscalar()
val_model = theano.function(
[index],
correct_rate,
givens={x: val_contexts[index * batch_size: (index + 1) * batch_size],
entities: val_indices[index * batch_size: (index + 1) * batch_size]}
)
test_model = theano.function(
[index],
correct_rate,
givens={x: test_contexts[index * batch_size: (index + 1) * batch_size],
entities: test_indices[index * batch_size: (index + 1) * batch_size]}
)
train_contexts = theano.shared(
value=np.zeros((3, 2)),
borrow=True)
int_train_contexts = T.cast(train_contexts, 'int32')
train_indices = theano.shared(
value=np.zeros((3, 2)),
borrow=True)
int_train_indices = T.cast(train_indices, 'int32')
train_model = theano.function(
[index],
loss,
updates=grad_updates,
givens={x: int_train_contexts[index * batch_size: (index + 1) * batch_size],
entities: int_train_indices[index * batch_size: (index + 1) * batch_size]}
)
fdebug = theano.function(
[index],
batch_entity_vecs,
givens={entities: int_train_indices[index * batch_size: (index + 1) * batch_size]}
)
# print fdebug(0)
val_perfs = [val_model(i) for i in xrange(num_val_batches)]
print('init val perf %f' % np.mean(val_perfs))
epoch = 0
max_val_perf = 0
test_perf = 0
print 'training ...'
while epoch < n_epochs:
f_train = open(train_data_file_name, 'rb')
epoch += 1
train_part_cnt = 0
cur_train_contexts, cur_train_indices = data_load.load_training_samples(f_train,
training_part_size,
wid_idx_dict,
sentence_len,
sentence_pad_len)
while not len(cur_train_contexts) == 0 and train_part_cnt < 100:
train_contexts.set_value(cur_train_contexts, borrow=True)
train_indices.set_value(cur_train_indices, borrow=True)
train_part_cnt += 1
num_train_batches = len(cur_train_contexts) / batch_size
# print 'num_train_batches', num_train_batches
mean_loss = 0
for minibatch_index in xrange(num_train_batches):
cur_loss = train_model(minibatch_index)
mean_loss += cur_loss
# print minibatch_index, cur_loss
print 'loss:', mean_loss / num_train_batches
# print fdebug(0)
val_perfs = [val_model(i) for i in xrange(num_val_batches)]
val_perf = np.mean(val_perfs)
print('epoch %i, training part %i, val perf %f(%f), test perf %f'
% (epoch, train_part_cnt, val_perf, max_val_perf, test_perf))
if val_perf > max_val_perf:
max_val_perf = val_perf
test_perfs = [test_model(i) for i in xrange(num_test_batches)]
test_perf = np.mean(test_perfs)
print('\tepoch %i, training part %i, test_perf %f'
% (epoch, train_part_cnt, test_perf))
cur_train_contexts, cur_train_indices = data_load.load_training_samples(f_train,
training_part_size,
wid_idx_dict,
sentence_len,
sentence_pad_len)
f_train.close()
def train_cnn_for_el(
train_data_file_name,
val_data_file_name,
num_val_candidates,
test_data_file_name,
num_test_candidates,
sentence_len,
word_vec_len,
all_words, # first row of all_words should be a non-existing word
wid_idx_dict,
entity_vecs,
entity_side_cnn=False,
gold_as_first_candidate=False,
skip_width_loading=40, # skip width while loading samples
n_epochs=25,
batch_size=50,
filter_hs=def_filter_hs,
num_feature_maps=100,
lr_decay=0.9,
sqr_norm_lim=9,
hidden_out_len=50,
training_part_size=50000,
num_train_candidates=2):
full_sentence_len = sentence_len + 2 * sentence_pad_len
rng = np.random.RandomState(3435)
print 'making entity_vecs...', len(entity_vecs)
if entity_side_cnn:
shared_entity_vecs = theano.shared(value=np.asarray(entity_vecs,
dtype="int32"),
name='entity_vecs',
borrow=True)
else:
shared_entity_vecs = theano.shared(value=np.asarray(
entity_vecs, dtype=theano.config.floatX),
name='entity_vecs',
borrow=True)
print 'making shared_words...', len(all_words)
shared_words = theano.shared(value=np.asarray(all_words,
dtype=theano.config.floatX),
name='shared_words',
borrow=True)
print 'done'
val_contexts, val_indices = data_load.load_samples_full(
val_data_file_name,
wid_idx_dict,
sentence_len,
sentence_pad_len,
skip_width=skip_width_loading,
num_candidates=num_val_candidates)
num_val_batches = len(val_contexts) / batch_size
print num_val_batches, 'validation batches'
print len(val_indices[0]), 'candidates per mention'
val_contexts = T.cast(to_theano_shared(val_contexts), 'int32')
val_indices = T.cast(to_theano_shared(val_indices), 'int32')
test_contexts, test_indices = data_load.load_samples_full(
test_data_file_name,
wid_idx_dict,
sentence_len,
sentence_pad_len,
skip_width=skip_width_loading,
num_candidates=num_test_candidates)
num_test_batches = len(test_contexts) / batch_size
print num_test_batches, 'test batches'
print len(test_indices[0]), 'candidates per mention'
test_contexts = T.cast(to_theano_shared(test_contexts), 'int32')
test_indices = T.cast(to_theano_shared(test_indices), 'int32')
if gold_as_first_candidate:
gold_labels = theano.shared(value=np.zeros(batch_size, dtype='int32'),
borrow=True)
else:
gold_labels = theano.shared(value=np.ones(batch_size, dtype='int32'),
borrow=True)
x = T.imatrix('x')
entities = T.imatrix('entities')
sentence_cnn0 = SentenceCNN(x, shared_words, full_sentence_len,
word_vec_len, filter_hs, num_feature_maps,
batch_size, hidden_out_len, rng)
mc = sentence_cnn0.output # mention contexts
unit_mc = mc / T.sqrt(T.maximum(T.sum(T.sqr(mc), 1), 0.0001)).dimshuffle(
0, 'x')
batch_entity_vecs = shared_entity_vecs[entities]
if entity_side_cnn:
loss, correct_rate, entity_side_params = get_training_variables_with_entity_side_cnn(
batch_entity_vecs, shared_words, word_vec_len, batch_size,
hidden_out_len, unit_mc, num_train_candidates, num_val_candidates,
gold_labels, rng)
else:
loss, correct_rate, entity_side_params = get_training_variables_no_entity_side_cnn(
batch_entity_vecs, len(entity_vecs[0]), hidden_out_len, unit_mc,
gold_labels, rng)
# params = matcher0.params + entity_side_params
# for conv_layer in conv_layers:
# params += conv_layer.params
# params = sentence_cnn0.params + matcher1.params
# params = sentence_cnn0.params + sentence_cnn1_train.params
params = sentence_cnn0.params + entity_side_params
grad_updates = sgd_updates_adadelta(params, loss, lr_decay, 1e-6,
sqr_norm_lim)
index = T.lscalar()
val_model = theano.function(
[index],
correct_rate,
givens={
x: val_contexts[index * batch_size:(index + 1) * batch_size],
entities: val_indices[index * batch_size:(index + 1) * batch_size]
})
test_model = theano.function(
[index],
correct_rate,
givens={
x: test_contexts[index * batch_size:(index + 1) * batch_size],
entities: test_indices[index * batch_size:(index + 1) * batch_size]
})
train_contexts = theano.shared(value=np.zeros((3, 2)), borrow=True)
int_train_contexts = T.cast(train_contexts, 'int32')
train_indices = theano.shared(value=np.zeros((3, 2)), borrow=True)
int_train_indices = T.cast(train_indices, 'int32')
train_model = theano.function(
[index],
loss,
updates=grad_updates,
givens={
x:
int_train_contexts[index * batch_size:(index + 1) * batch_size],
entities:
int_train_indices[index * batch_size:(index + 1) * batch_size]
})
fdebug = theano.function(
[index],
batch_entity_vecs,
givens={
entities:
int_train_indices[index * batch_size:(index + 1) * batch_size]
})
# print fdebug(0)
val_perfs = [val_model(i) for i in xrange(num_val_batches)]
print('init val perf %f' % np.mean(val_perfs))
epoch = 0
max_val_perf = 0
test_perf = 0
print 'training ...'
while epoch < n_epochs:
f_train = open(train_data_file_name, 'rb')
epoch += 1
train_part_cnt = 0
cur_train_contexts, cur_train_indices = data_load.load_training_samples(
f_train, training_part_size, wid_idx_dict, sentence_len,
sentence_pad_len)
while not len(cur_train_contexts) == 0 and train_part_cnt < 100:
train_contexts.set_value(cur_train_contexts, borrow=True)
train_indices.set_value(cur_train_indices, borrow=True)
train_part_cnt += 1
num_train_batches = len(cur_train_contexts) / batch_size
# print 'num_train_batches', num_train_batches
mean_loss = 0
for minibatch_index in xrange(num_train_batches):
cur_loss = train_model(minibatch_index)
mean_loss += cur_loss
# print minibatch_index, cur_loss
print 'loss:', mean_loss / num_train_batches
# print fdebug(0)
val_perfs = [val_model(i) for i in xrange(num_val_batches)]
val_perf = np.mean(val_perfs)
print('epoch %i, training part %i, val perf %f(%f), test perf %f' %
(epoch, train_part_cnt, val_perf, max_val_perf, test_perf))
if val_perf > max_val_perf:
max_val_perf = val_perf
test_perfs = [test_model(i) for i in xrange(num_test_batches)]
test_perf = np.mean(test_perfs)
print('\tepoch %i, training part %i, test_perf %f' %
(epoch, train_part_cnt, test_perf))
cur_train_contexts, cur_train_indices = data_load.load_training_samples(
f_train, training_part_size, wid_idx_dict, sentence_len,
sentence_pad_len)
f_train.close()
def train_cnn_for_el(train_data_file_name,
val_data_file_name,
num_val_candidates,
test_data_file_name,
num_test_candidates,
img_h, img_w,
all_words, # first row of all_words should be a non-existing word
wid_idx_dict,
entity_vecs,
gold_as_first_candidate=False,
skip_width_loading=40, # skip width while loading samples
n_epochs=25,
batch_size=50,
filter_hs=def_filter_hs,
num_feature_maps=100,
conv_non_linear="relu",
lr_decay=0.9,
sqr_norm_lim=9,
hidden_out_len=50,):
rng = np.random.RandomState(3435)
x = T.imatrix('x')
# es = T.imatrix('es')
# es_test = T.imatrix('es_test')
entities = T.imatrix('entities')
print 'making entity_vecs...', len(entity_vecs)
shared_entity_vecs = theano.shared(value=np.asarray(entity_vecs, dtype=theano.config.floatX),
name='entity_vecs', borrow=True)
# shared_entity_vecs = theano.shared(value=np.asarray(entity_vecs, dtype=np.float32),
# name='entity_vecs', borrow=True)
print 'making shared_words...', len(all_words)
shared_words = theano.shared(value=np.asarray(all_words, dtype=theano.config.floatX),
name='shared_words', borrow=True)
print 'done'
# test_contexts, test_indices = get_data_set_full(test_data_file_name, wid_idx_dict, skip_width_loading)
# num_test_batches = test_indices.shape[0] / batch_size
# num_val_contexts, val_contexts, val_indices = get_data_set_full(val_data_file_name,
# wid_idx_dict, skip_width_loading)
val_contexts, val_indices = data_load.load_samples_full(val_data_file_name, wid_idx_dict, sentence_len,
sentence_pad_len,
skip_width=skip_width_loading,
num_candidates=num_val_candidates)
num_val_batches = len(val_contexts) / batch_size
print num_val_batches, 'validation batches'
print len(val_indices[0]), 'candidates per mention'
if gold_as_first_candidate:
gold_labels = theano.shared(value=np.zeros(batch_size,
dtype='int32'),
borrow=True)
else:
gold_labels = theano.shared(value=np.ones(batch_size,
dtype='int32'),
borrow=True)
val_contexts = T.cast(to_theano_shared(val_contexts), 'int32')
val_indices = T.cast(to_theano_shared(val_indices), 'int32')
filter_shapes = []
pool_sizes = []
filter_w = img_w
for filter_h in filter_hs:
filter_shapes.append((num_feature_maps, 1, filter_h, filter_w))
pool_sizes.append((img_h - filter_h + 1, img_w - filter_w + 1))
layer0_input = shared_words[x.flatten()].reshape((x.shape[0], 1, x.shape[1], shared_words.shape[1]))
conv_layers = []
layer1_inputs = []
for i in xrange(len(filter_hs)):
filter_shape = filter_shapes[i]
pool_size = pool_sizes[i]
conv_layer = LeNetConvPoolLayer(rng, input=layer0_input, image_shape=(batch_size, 1, img_h, img_w),
filter_shape=filter_shape, poolsize=pool_size, non_linear=conv_non_linear)
layer1_input = conv_layer.output.flatten(2)
conv_layers.append(conv_layer)
layer1_inputs.append(layer1_input)
layer1_input = T.concatenate(layer1_inputs, 1)
matcher0 = HiddenLayer(rng, layer1_input, num_feature_maps * len(filter_hs),
hidden_out_len, relu)
mc = matcher0.output # mention contexts
unit_mc = mc / T.sqrt(T.maximum(T.sum(T.sqr(mc), 1), 0.0001)).dimshuffle(0, 'x')
batch_entity_vecs = shared_entity_vecs[entities]
matcher1 = HiddenLayer(rng, batch_entity_vecs, len(entity_vecs[0]), hidden_out_len, relu)
entity_reps = matcher1.output
# entity_reps = batch_entity_vecs
unit_entity_reps = entity_reps / T.sqrt(T.maximum(T.sum(T.sqr(entity_reps), 2), 0.0001)).dimshuffle(0, 1, 'x')
similarities = (unit_mc.dimshuffle(0, 'x', 1) * unit_entity_reps).sum(axis=2)
correct_rate = T.mean(T.eq(gold_labels, T.argmax(similarities, axis=1)))
loss = T.maximum(0, 1 - similarities[:, 0] + similarities[:, 1]).sum()
# similarities = (mc.dimshuffle(0, 'x', 1) * batch_entity_vecs).sum(axis=2) # / mc_norm
params = matcher0.params + matcher1.params
# params = matcher0.params
for conv_layer in conv_layers:
params += conv_layer.params
grad_updates = sgd_updates_adadelta(params, loss, lr_decay, 1e-6, sqr_norm_lim)
index = T.lscalar()
# test_model = theano.function(
# [index],
# error_rate,
# givens={x: test_contexts[index * batch_size: (index + 1) * batch_size],
# es: test_indices[index * batch_size: (index + 1) * batch_size]}
# )
val_model = theano.function(
[index],
correct_rate,
givens={x: val_contexts[index * batch_size: (index + 1) * batch_size],
entities: val_indices[index * batch_size: (index + 1) * batch_size]}
)
train_contexts = theano.shared(
value=np.zeros((3, 2)),
borrow=True)
int_train_contexts = T.cast(train_contexts, 'int32')
train_indices = theano.shared(
value=np.zeros((3, 2)),
borrow=True)
int_train_indices = T.cast(train_indices, 'int32')
train_model = theano.function(
[index],
loss,
updates=grad_updates,
givens={x: int_train_contexts[index * batch_size: (index + 1) * batch_size],
entities: int_train_indices[index * batch_size: (index + 1) * batch_size]}
)
fdebug = theano.function(
[index],
similarities,
givens={x: int_train_contexts[index * batch_size: (index + 1) * batch_size],
entities: int_train_indices[index * batch_size: (index + 1) * batch_size]}
)
# print fdebug(0)
val_perfs = [val_model(i) for i in xrange(num_val_batches)]
print('init val perf %f' % np.mean(val_perfs))
print 'training ...'
f_train = open(train_data_file_name, 'rb')
epoch = 0
while epoch < n_epochs:
epoch += 1
train_part_cnt = 0
# num_train_contexts, cur_train_contexts, cur_train_indices = get_data_set_part(
# f_train, wid_idx_dict, 50000)
cur_train_contexts, cur_train_indices = data_load.load_training_samples(f_train,
training_part_size,
wid_idx_dict,
sentence_len,
sentence_pad_len)
while not len(cur_train_contexts) == 0:
train_contexts.set_value(cur_train_contexts, borrow=True)
train_indices.set_value(cur_train_indices, borrow=True)
# print fdebug(0)
train_part_cnt += 1
num_train_batches = len(cur_train_contexts) / batch_size
# print 'num_train_batches', num_train_batches
mean_loss = 0
for minibatch_index in xrange(num_train_batches):
cur_loss = train_model(minibatch_index)
mean_loss += cur_loss
# if (minibatch_index + 1) % (num_train_batches / 3) == 0: # show some progress
# print minibatch_index, num_train_batches
print 'loss:', mean_loss / num_train_batches
# print fdebug(0)
val_perfs = [val_model(i) for i in xrange(num_val_batches)]
val_perf = np.mean(val_perfs)
print('epoch %i, training part %i, val perf %f'
% (epoch, train_part_cnt, val_perf))
cur_train_contexts, cur_train_indices = data_load.load_training_samples(f_train,
training_part_size,
wid_idx_dict,
sentence_len,
sentence_pad_len)
# num_train_contexts, cur_train_contexts, cur_train_indices = get_data_set_part(
# f_train, wid_idx_dict, 50000)
f_train.close()