def main():
# Step 1: load data
X, Y, groups = load_data(track_path=TRACK_PATH,
bed_path=BED_PATH,
group_path=GROUP_PATH)
x_train, y_train, x_test, y_test = split_train_test(X, Y, groups, N_SPLITS)
# Step 2: run models
models = [
CNN_Builder.build_Sequential(model_config)
for model_config in model_configs
]
for model in models:
compile_model(model, metric_names=("auprc", "auroc"), optimizer="adam")
histories = [
fit_model(model,
x_train,
y_train,
x_test,
y_test,
batch_size=BATCH_SIZE,
epochs=EPOCHS,
use_class_weight=USE_CLASS_WEIGHT,
use_sample_weight=USE_SAMPLE_WEIGHT,
use_reduce_rl=USE_REDUCE_RL,
use_early_stopping=USE_EARLY_STOPPING,
verbose=VERBOSE) for model in models
]
# Step 3: save artifacts
script_fn = os.path.basename(__file__)
folder = script_fn.split(".py")[0]
model_names = [
get_model_name(model_configs[i], i + 1)
for i in range(len(model_configs))
]
save_single_metric_of_multi_models(folder, model_names, histories,
"val_auprc")
save_all_metrics_of_multi_models(folder, model_names, histories)
save_history_copies(folder, model_names, histories)
print("{} finished!".format(script_fn))
def test():
"""
测试函数，即模拟测试模型的训练、预测、保存操作。
:return:
"""
bad_sentences = extract_sentences_from_file('data/bad.txt')
good_sentences = extract_sentences_from_file('data/good.txt')
# 进行fit操作，建立词库
word_sequence = Word_Sequence()
word_sequence.fit(good_sentences + bad_sentences)
good_sentences_vec = word_sequence.transfroms(good_sentences, max_len=25)
bad_sentences_vec = word_sequence.transfroms(bad_sentences, max_len=25)
# 创建训练和测试数据集
data_sets = list()
labels = list()
for sent_vec in good_sentences_vec:
data_sets.append(sent_vec)
labels.append(0)
for sent_vec in bad_sentences_vec:
data_sets.append(sent_vec)
labels.append(1)
(X_train, Y_train, X_valid, Y_valid, X_test, Y_test) = \
split_train_test(data_sets, labels, test_size=0.2, valid_size=0.1)
# 创建dataloader
train_dataloader = pick_dataloader(X_train, Y_train, shuffle=False)
test_dataloader = pick_dataloader(X_test, Y_test, shuffle=False)
valid_dataloader = pick_dataloader(X_valid, Y_valid, shuffle=False)
# 构建模型
lstm_model = \
LSTM_Model(len(word_sequence), embed_size=256, hidden_size=256, output_size=2)
# 设置优化器和损失函数
optimizer = optim.Adam(lstm_model.parameters(), lr=0.0001)
criterion = NLLLoss()
device = 'GPU' if torch.cuda.is_available() else 'CPU'
# 训练模型
train_info = train_model(lstm_model, train_dataloader,
optimizer=optimizer,
criterion=criterion,
epochs=2,
print_every=100,
valid_dataloader=valid_dataloader,
device=device,
use_accuracy=True,
use_valid=True)
# print(train_info)
# 测试模型
test_model(lstm_model,
test_dataloader=test_dataloader,
criterion=criterion,
device=device,
use_accuracy=True)
# 保存模型
save_model(lstm_model)
# 保存提取的词库
save_word_sequence(word_sequence)
def create_dataset():
# 1. 提取标签信息和数据信息, 保存在字典中
data_dict = {}
for label, file in config.data_files.items():
sentences = extract_sentences_from_file(file)
data_dict[label] = sentences
# 2. 建立词库
# 2.1 提取所有的句子信息，保存在 all_sentences 中, 用以构建词库
all_sentences = list()
for sentences in data_dict.values():
all_sentences = all_sentences + sentences
# 2.2 构建词库
word_sequence = Word_Sequence()
word_sequence.fit(all_sentences)
# 3. 创建训练、测试、验证数据集
# 将数据转换为向量，保存在 datasets 中
datasets = []
# 保存标签的名称
label_name = []
for label, dataset in data_dict.items():
# lstm 模型数据集
if config.model.lower() == 'lstm':
dataset_vec = word_sequence.transfroms(dataset,
max_len=config.max_len)
# fnn 模型数据集
elif config.model.lower() == 'fnn':
dataset_vec = word_sequence.transfroms_word_bag(dataset)
datasets.append(dataset_vec)
label_name.append(label)
# 标记数据，对datset数据集中的每个句子向量进行标记。
# 如: 句子分析属于 good 类型，则标记为: 0 ，bad 类型，则标记为：1
datasets_vec = list()
labels = list()
for i, dataset_vec in enumerate(datasets):
for sentence_vec in dataset_vec:
datasets_vec.append(sentence_vec)
labels.append(i)
# 划分训练、测试、验证数据集
(X_train, Y_train, X_valid, Y_valid, X_test, Y_test) = \
split_train_test(datasets_vec, labels,
test_size=config.test_size,
valid_size=config.valid_size)
# 4.包装数据集为 dataloader.
train_dataloader = pick_dataloader(X_train,
Y_train,
batch_size=config.batch_size,
shuffle=True,
data_type=config.model)
test_dataloader = pick_dataloader(X_test,
Y_test,
batch_size=config.batch_size,
shuffle=False,
data_type=config.model)
valid_dataloader = pick_dataloader(X_valid,
Y_valid,
batch_size=config.batch_size,
shuffle=False,
data_type=config.model)
save_word_sequence(word_sequence,
save_path=config.word_sequence_save_path,
file_path=config.word_sequence_save_file)
save_object(label_name, config.model_save_path, label_file_name)
# 返回数据集和单词序列
return (train_dataloader, valid_dataloader, test_dataloader, word_sequence,
label_name)
