def create_analysis(upload_id, type, params):
u""" Starts a new analysis for the given file. """
# We need to have an option of whether they want mail
# and/or want the call to block until finished, or neither
method = '/msa/{0}/{1}'.format(upload_id, type)
params["upload_id"] = upload_id
json = dm.post(method, params)
return Analysis(json)
def upload_file(fn, datatype, gencode, mailaddr=""):
u""" Starts a new analysis for the given file. """
# We need to have an option of whether they want mail
# and/or want the call to block until finished, or neither
method = "/msa"
fh = {"files":(fn, open(fn,'rb').read())}
params = {
"files" : fh,
"datatype" : datatype,
"gencodeid" : gencode,
"mailaddr" : mailaddr
}
json = dm.post(method, params)
return MSA(json)
def start(fn, distance_threshold, min_overlap, ambiguity_handling, mail=''):
u""" Starts a new analysis for the given file. """
# We need to have an option of whether they want mail
# and/or want the call to block until finished, or neither
method = '/hivcluster'
fh = {'files' : (fn, open(fn,'rb'))}
params = {
'files' : fh,
'distance_threshold' : distance_threshold,
'min_overlap' : min_overlap,
'ambiguity_handling' : ambiguity_handling,
'mail' : mail
}
json = dm.post(method, params)
return HivCluster(json)
