def test_01_getdata(self):
data = dbaccess.getdata()
self.failUnless(len(data.executables.keys()) > 0)
for sequences in data.executables.values():
for seq in sequences:
self.assertEquals(len(seq), config.SEQUENCE_LENGTHS)
def test_01_getdata(self):
data = dbaccess.getdata()
self.failUnless(len(data.executables.keys()) > 0)
for sequences in data.executables.values():
for seq in sequences:
self.assertEquals(len(seq), config.SEQUENCE_LENGTHS)
def test_02_putdata(self):
# fail if fake executable is present BEFORE putdata
data = dbaccess.getdata()
self.failIf("no such executable" in data.executables)
# adding fake executable
data.executables["no such executable"] = [
('no', 'such', 'sequence'),
]
dbaccess.putdata(data)
# fail if NOT present AFTER putdata
data = dbaccess.getdata()
self.failUnless("no such executable" in data.executables)
# removing
del data.executables["no such executable"]
dbaccess.putdata(data)
# fail if fake executable is present after removing it
data = dbaccess.getdata()
self.failIf("no such executable" in data.executables)
def test_02_putdata(self):
# fail if fake executable is present BEFORE putdata
data = dbaccess.getdata()
self.failIf("no such executable" in data.executables)
# adding fake executable
data.executables["no such executable"] = [
('no', 'such', 'sequence'),
]
dbaccess.putdata(data)
# fail if NOT present AFTER putdata
data = dbaccess.getdata()
self.failUnless("no such executable" in data.executables)
# removing
del data.executables["no such executable"]
dbaccess.putdata(data)
# fail if fake executable is present after removing it
data = dbaccess.getdata()
self.failIf("no such executable" in data.executables)
def main():
data = dbaccess.getdata()
dbaccess.check_seq_length_consistency(data.sequence_lengths)
while True:
input_line = sys.stdin.readline()
if not input_line:
break
execname, uid, calls = reader.line2data(input_line)
if execname not in data.executables:
continue
known_seqs = tuple(data.executables[execname])
minimum = min_distance(calls, known_seqs)
if minimum > config.ALLOWED_MISMATCHES:
print minimum, execname, calls
def main():
data = dbaccess.getdata()
dbaccess.check_seq_length_consistency(data.sequence_lengths)
while True:
input_line = sys.stdin.readline()
if not input_line:
break
execname, uid, calls = reader.line2data(input_line)
if execname not in data.executables:
continue
known_seqs = tuple(data.executables[execname])
minimum = min_distance(calls, known_seqs)
if minimum > config.ALLOWED_MISMATCHES:
print minimum, execname, calls
#!/usr/bin/python
import os
import config
import dbaccess
print "Database size:", os.stat(config.FILENAME).st_size / 1024, "KB\n"
reader = dbaccess.getdata()
execnames = reader.executables.keys()
print len(execnames), "executables\n"
with_counts = [ (len(reader.executables[execname]), execname)
for execname in execnames ]
print "Top 10:"
for data in sorted(with_counts, reverse=True)[:10]:
print data[1], data[0]
print
print round((reader.ending - reader.starting) / 60), "minutes"
#!/usr/bin/python
import os
import config
import dbaccess
print "Database size:", os.stat(config.FILENAME).st_size / 1024, "KB\n"
reader = dbaccess.getdata()
execnames = reader.executables.keys()
print len(execnames), "executables\n"
with_counts = [(len(reader.executables[execname]), execname)
for execname in execnames]
print "Top 10:"
for data in sorted(with_counts, reverse=True)[:10]:
print data[1], data[0]
print
print round((reader.ending - reader.starting) / 60), "minutes"
def test_02_min_distance_real_data(self):
data = dbaccess.getdata()
known_seqs = tuple(data.executables[data.executables.keys()[0]])
self.__min_distance_best_case(known_seqs)
self.__min_distance_worst_case(known_seqs)
def test_02_min_distance_real_data(self):
data = dbaccess.getdata()
known_seqs = tuple(data.executables[data.executables.keys()[0]])
self.__min_distance_best_case(known_seqs)
self.__min_distance_worst_case(known_seqs)
