seg_height, seg_width = seg_img.shape
if seg_width == 2 * src_width or seg_width == 3 * src_width:
_start_id = seg_width - src_width
seg_img = seg_img[:, _start_id:]
# print('seg_img.shape: ', seg_img.shape)
# print('labels_img_orig.shape: ', labels_img_orig.shape)
pix_acc[img_id] = eval.pixel_accuracy(seg_img, labels_img_orig)
_acc, mean_acc[img_id] = eval.mean_accuracy(seg_img,
labels_img_orig,
return_acc=1)
_IU, mean_IU[img_id] = eval.mean_IU(seg_img,
labels_img_orig,
return_iu=1)
fw_IU[img_id], _fw = eval.frequency_weighted_IU(seg_img,
labels_img_orig,
return_freq=1)
fw_sum += _fw
_fw_total = np.sum(_fw)
# print('_fw: {}'.format(_fw))
# print('_fw_total: {}'.format(_fw_total))
_fw_frac = np.array(_fw) / float(_fw_total)
print('_fw_frac: {}'.format(_fw_frac))
def run(params):
"""
:param VisParams params:
:return:
"""
eval_mode = False
if params.multi_sequence_db:
assert params.vis_split, "vis_split must be provided for CTC"
"""some repeated code here to allow better IntelliSense"""
if params.dataset.lower() == 'ctc':
from new_deeplab.datasets.build_ctc_data import CTCInfo
db_splits = CTCInfo.DBSplits().__dict__
sequences = CTCInfo.sequences
elif params.dataset.lower() in ('ipsc', 'ipsc_2_class',
'ipsc_5_class'):
from new_deeplab.datasets.ipsc_info import IPSCInfo
db_splits = IPSCInfo.DBSplits().__dict__
sequences = IPSCInfo.sequences
elif params.dataset.lower() == 'ipsc_patches':
from new_deeplab.datasets.ipsc_info import IPSCPatchesInfo
db_splits = IPSCPatchesInfo.DBSplits().__dict__
sequences = IPSCPatchesInfo.sequences
else:
raise AssertionError(
'multi_sequence_db {} is not supported yet'.format(
params.dataset))
seq_ids = db_splits[params.vis_split]
src_files = []
seg_labels_list = []
if params.no_labels:
src_labels_list = None
else:
src_labels_list = []
total_frames = 0
seg_total_frames = 0
for seq_id in seq_ids:
seq_name, n_frames = sequences[seq_id]
images_path = os.path.join(params.images_path, seq_name)
if params.no_labels:
labels_path = ''
else:
labels_path = os.path.join(params.labels_path, seq_name)
_src_files, _src_labels_list, _total_frames = read_data(
images_path, params.images_ext, labels_path, params.labels_ext)
_src_filenames = [
os.path.splitext(os.path.basename(k))[0] for k in _src_files
]
if not params.no_labels:
_src_labels_filenames = [
os.path.splitext(os.path.basename(k))[0]
for k in _src_labels_list
]
assert _src_labels_filenames == _src_filenames, "mismatch between image and label filenames"
eval_mode = False
if params.seg_path and params.seg_ext:
seg_path = os.path.join(params.seg_path, seq_name)
_, _seg_labels_list, _seg_total_frames = read_data(
labels_path=seg_path,
labels_ext=params.seg_ext,
labels_type='seg')
_seg_labels__filenames = [
os.path.splitext(os.path.basename(k))[0]
for k in _seg_labels_list
]
if _seg_total_frames != _total_frames:
if params.seg_on_subset and _seg_total_frames < _total_frames:
matching_ids = [
_src_filenames.index(k)
for k in _seg_labels__filenames
]
_src_files = [_src_files[i] for i in matching_ids]
if not params.no_labels:
_src_labels_list = [
_src_labels_list[i] for i in matching_ids
]
_total_frames = _seg_total_frames
else:
raise AssertionError(
'Mismatch between no. of frames in GT and seg labels: {} and {}'
.format(_total_frames, _seg_total_frames))
seg_labels_list += _seg_labels_list
seg_total_frames += _seg_total_frames
eval_mode = True
src_files += _src_files
if not params.no_labels:
src_labels_list += _src_labels_list
# else:
# params.stitch = params.save_stitched = 1
total_frames += _total_frames
else:
src_files, src_labels_list, total_frames = read_data(
params.images_path, params.images_ext, params.labels_path,
params.labels_ext)
eval_mode = False
if params.labels_path and params.seg_path and params.seg_ext:
_, seg_labels_list, seg_total_frames = read_data(
labels_path=params.seg_path,
labels_ext=params.seg_ext,
labels_type='seg')
if seg_total_frames != total_frames:
raise SystemError(
'Mismatch between no. of frames in GT and seg labels: {} and {}'
.format(total_frames, seg_total_frames))
eval_mode = True
# else:
# params.stitch = params.save_stitched = 1
if params.end_id < params.start_id:
params.end_id = total_frames - 1
classes, composite_classes = read_class_info(params.class_info_path)
n_classes = len(classes)
class_ids = list(range(n_classes))
class_id_to_color = {i: k[1] for i, k in enumerate(classes)}
all_classes = [k[0] for k in classes + composite_classes]
if not params.save_path:
if eval_mode:
params.save_path = os.path.join(os.path.dirname(params.seg_path),
'vis')
else:
params.save_path = os.path.join(
os.path.dirname(params.images_path), 'vis')
if not os.path.isdir(params.save_path):
os.makedirs(params.save_path)
if params.stitch and params.save_stitched:
print('Saving visualization images to: {}'.format(params.save_path))
log_fname = os.path.join(params.save_path,
'vis_log_{:s}.txt'.format(getDateTime()))
print('Saving log to: {}'.format(log_fname))
save_path_parent = os.path.dirname(params.save_path)
templ_1 = os.path.basename(save_path_parent)
templ_2 = os.path.basename(os.path.dirname(save_path_parent))
templ = '{}_{}'.format(templ_1, templ_2)
# if params.selective_mode:
# label_diff = int(255.0 / n_classes)
# else:
# label_diff = int(255.0 / (n_classes - 1))
print('templ: {}'.format(templ))
# print('label_diff: {}'.format(label_diff))
n_frames = params.end_id - params.start_id + 1
pix_acc = np.zeros((n_frames, ))
mean_acc = np.zeros((n_frames, ))
# mean_acc_ice = np.zeros((n_frames,))
# mean_acc_ice_1 = np.zeros((n_frames,))
# mean_acc_ice_2 = np.zeros((n_frames,))
#
mean_IU = np.zeros((n_frames, ))
# mean_IU_ice = np.zeros((n_frames,))
# mean_IU_ice_1 = np.zeros((n_frames,))
# mean_IU_ice_2 = np.zeros((n_frames,))
fw_IU = np.zeros((n_frames, ))
fw_sum = np.zeros((n_classes, ))
print_diff = max(1, int(n_frames * 0.01))
avg_mean_acc = {c: 0 for c in all_classes}
avg_mean_IU = {c: 0 for c in all_classes}
skip_mean_acc = {c: 0 for c in all_classes}
skip_mean_IU = {c: 0 for c in all_classes}
_pause = 1
labels_img = None
for img_id in range(params.start_id, params.end_id + 1):
stitched = []
# img_fname = '{:s}_{:d}.{:s}'.format(fname_templ, img_id + 1, img_ext)
src_img_fname = src_files[img_id]
img_dir = os.path.dirname(src_img_fname)
seq_name = os.path.basename(img_dir)
img_fname = os.path.basename(src_img_fname)
img_fname_no_ext = os.path.splitext(img_fname)[0]
src_img = None
border_img = None
if params.stitch or params.show_img:
# src_img_fname = os.path.join(params.images_path, img_fname)
src_img = cv2.imread(src_img_fname)
if src_img is None:
raise SystemError(
'Source image could not be read from: {}'.format(
src_img_fname))
try:
src_height, src_width, _ = src_img.shape
except ValueError as e:
print('src_img_fname: {}'.format(src_img_fname))
print('src_img: {}'.format(src_img))
print('src_img.shape: {}'.format(src_img.shape))
print('error: {}'.format(e))
sys.exit(1)
if not params.blended:
stitched.append(src_img)
border_img = np.full_like(src_img, 255)
border_img = border_img[:, :5, ...]
if not params.no_labels:
# labels_img_fname = os.path.join(params.labels_path, img_fname_no_ext + '.{}'.format(params.labels_ext))
labels_img_fname = src_labels_list[img_id]
labels_img_orig = cv2.imread(labels_img_fname)
if labels_img_orig is None:
raise SystemError(
'Labels image could not be read from: {}'.format(
labels_img_fname))
_, src_width = labels_img_orig.shape[:2]
# if len(labels_img_orig.shape) == 3:
# labels_img_orig = np.squeeze(labels_img_orig[:, :, 0])
if params.show_img:
cv2.imshow('labels_img_orig', labels_img_orig)
labels_img_orig, label_img_raw, class_to_ids = remove_fuzziness_in_mask(
labels_img_orig,
n_classes,
class_id_to_color,
fuzziness=5,
check_equality=0)
labels_img = np.copy(labels_img_orig)
# if params.normalize_labels:
# if params.selective_mode:
# selective_idx = (labels_img_orig == 255)
# print('labels_img_orig.shape: {}'.format(labels_img_orig.shape))
# print('selective_idx count: {}'.format(np.count_nonzero(selective_idx)))
# labels_img_orig[selective_idx] = n_classes
# if params.show_img:
# cv2.imshow('labels_img_orig norm', labels_img_orig)
# labels_img = (labels_img_orig.astype(np.float64) * label_diff).astype(np.uint8)
# else:
# labels_img = np.copy(labels_img_orig)
# if len(labels_img.shape) != 3:
# labels_img = np.stack((labels_img, labels_img, labels_img), axis=2)
if params.stitch:
if params.blended:
full_mask_gs = cv2.cvtColor(labels_img, cv2.COLOR_BGR2GRAY)
mask_binary = full_mask_gs == 0
labels_img_vis = (0.5 * src_img + 0.5 * labels_img).astype(
np.uint8)
labels_img_vis[mask_binary] = src_img[mask_binary]
else:
labels_img_vis = labels_img
if params.add_border:
stitched.append(border_img)
stitched.append(labels_img_vis)
if eval_mode:
# seg_img_fname = os.path.join(params.seg_path, img_fname_no_ext + '.{}'.format(params.seg_ext))
seg_img_fname = seg_labels_list[img_id]
seg_img = cv2.imread(seg_img_fname)
if seg_img is None:
raise SystemError(
'Segmentation image could not be read from: {}'.format(
seg_img_fname))
# seg_img = convert_to_raw_mask(seg_img, n_classes, seg_img_fname)
if len(seg_img.shape) == 3:
seg_img = np.squeeze(seg_img[:, :, 0])
eval_cl, _ = eval.extract_classes(seg_img)
gt_cl, _ = eval.extract_classes(label_img_raw)
# if seg_img.max() > n_classes - 1:
# seg_img = (seg_img.astype(np.float64) / label_diff).astype(np.uint8)
seg_height, seg_width = seg_img.shape
if seg_width == 2 * src_width or seg_width == 3 * src_width:
_start_id = seg_width - src_width
seg_img = seg_img[:, _start_id:]
# print('seg_img.shape: ', seg_img.shape)
# print('labels_img_orig.shape: ', labels_img_orig.shape)
pix_acc[img_id] = eval.pixel_accuracy(seg_img, label_img_raw,
class_ids)
_acc, mean_acc[img_id] = eval.mean_accuracy(seg_img,
label_img_raw,
class_ids,
return_acc=1)
_IU, mean_IU[img_id] = eval.mean_IU(seg_img,
label_img_raw,
class_ids,
return_iu=1)
fw_IU[img_id], _fw = eval.frequency_weighted_IU(seg_img,
label_img_raw,
class_ids,
return_freq=1)
# try:
# fw_sum += _fw
# except ValueError as e:
# print('fw_sum: {}'.format(fw_sum))
# print('_fw: {}'.format(_fw))
#
# eval_cl, _ = eval.extract_classes(seg_img)
# gt_cl, _ = eval.extract_classes(label_img_raw)
# cl = np.union1d(eval_cl, gt_cl)
#
# print('cl: {}'.format(cl))
# print('eval_cl: {}'.format(eval_cl))
# print('gt_cl: {}'.format(gt_cl))
#
# raise ValueError(e)
for _class_name, _, base_ids in composite_classes:
_acc_list = np.asarray(list(_acc.values()))
_mean_acc = np.mean(_acc_list[base_ids])
avg_mean_acc[_class_name] += (
_mean_acc - avg_mean_acc[_class_name]) / (img_id + 1)
_IU_list = np.asarray(list(_IU.values()))
_mean_IU = np.mean(_IU_list[base_ids])
avg_mean_IU[_class_name] += (
_mean_IU - avg_mean_IU[_class_name]) / (img_id + 1)
for _class_id, _class_data in enumerate(classes):
_class_name = _class_data[0]
try:
_mean_acc = _acc[_class_id]
avg_mean_acc[_class_name] += (
_mean_acc - avg_mean_acc[_class_name]) / (
img_id - skip_mean_acc[_class_name] + 1)
except KeyError:
print('\nskip_mean_acc {}: {}'.format(
_class_name, img_id))
skip_mean_acc[_class_name] += 1
try:
_mean_IU = _IU[_class_id]
avg_mean_IU[_class_name] += (
_mean_IU - avg_mean_IU[_class_name]) / (
img_id - skip_mean_IU[_class_name] + 1)
except KeyError:
print('\nskip_mean_IU {}: {}'.format(
_class_name, img_id))
skip_mean_IU[_class_name] += 1
# seg_img = (seg_img * label_diff).astype(np.uint8)
seg_img_vis = raw_seg_to_rgb(seg_img, class_id_to_color)
if params.stitch and params.stitch_seg:
if params.blended:
full_mask_gs = cv2.cvtColor(seg_img_vis,
cv2.COLOR_BGR2GRAY)
mask_binary = full_mask_gs == 0
seg_img_vis = (0.5 * src_img +
0.5 * seg_img_vis).astype(np.uint8)
seg_img_vis[mask_binary] = src_img[mask_binary]
if params.add_border:
stitched.append(border_img)
stitched.append(seg_img_vis)
if not params.stitch and params.show_img:
cv2.imshow('seg_img', seg_img_vis)
# else:
# _, _fw = eval.frequency_weighted_IU(label_img_raw, label_img_raw, return_freq=1)
# try:
# fw_sum += _fw
# except ValueError as e:
# print('fw_sum: {}'.format(fw_sum))
# print('_fw: {}'.format(_fw))
#
# gt_cl, _ = eval.extract_classes(label_img_raw)
# print('gt_cl: {}'.format(gt_cl))
# for k in range(n_classes):
# if k not in gt_cl:
# _fw.insert(k, 0)
#
# fw_sum += _fw
# _fw_total = np.sum(_fw)
# print('_fw: {}'.format(_fw))
# print('_fw_total: {}'.format(_fw_total))
# _fw_frac = np.array(_fw) / float(_fw_total)
# print('_fw_frac: {}'.format(_fw_frac))
if params.stitch:
stitched = np.concatenate(stitched, axis=1)
if params.save_stitched:
seg_save_path = os.path.join(
params.save_path,
'{}_{}.{}'.format(seq_name, img_fname_no_ext,
params.out_ext))
cv2.imwrite(seg_save_path, stitched)
if params.show_img:
cv2.imshow('stitched', stitched)
else:
if params.show_img:
cv2.imshow('src_img', src_img)
if params.labels_path:
cv2.imshow('labels_img', labels_img)
if params.show_img:
k = cv2.waitKey(1 - _pause)
if k == 27:
sys.exit(0)
elif k == 32:
_pause = 1 - _pause
img_done = img_id - params.start_id + 1
if img_done % print_diff == 0:
log_txt = 'Done {:5d}/{:5d} frames'.format(img_done, n_frames)
if eval_mode:
log_txt = '{:s} pix_acc: {:.5f} mean_acc: {:.5f} mean_IU: {:.5f} fw_IU: {:.5f}'.format(
log_txt, pix_acc[img_id], mean_acc[img_id],
mean_IU[img_id], fw_IU[img_id])
for _class in all_classes:
log_txt += ' acc {}: {:.5f} '.format(
_class, avg_mean_acc[_class])
for _class in all_classes:
log_txt += ' IU {}: {:.5f} '.format(
_class, avg_mean_acc[_class])
print_and_write(log_txt, log_fname)
sys.stdout.write('\n')
sys.stdout.flush()
if eval_mode:
log_txt = "pix_acc\t mean_acc\t mean_IU\t fw_IU\n{:.5f}\t{:.5f}\t{:.5f}\t{:.5f}\n".format(
np.mean(pix_acc), np.mean(mean_acc), np.mean(mean_IU),
np.mean(fw_IU))
for _class in all_classes:
log_txt += ' mean_acc {}\t'.format(_class)
log_txt += '\n'
for _class in all_classes:
log_txt += ' {:.5f}\t'.format(avg_mean_acc[_class])
log_txt += '\n'
for _class in all_classes:
log_txt += ' mean_IU {}\t'.format(_class)
log_txt += '\n'
for _class in all_classes:
log_txt += ' {:.5f}\t'.format(avg_mean_IU[_class])
log_txt += '\n'
print_and_write(log_txt, log_fname)
log_txt = templ + '\n\t'
for _class in classes:
log_txt += '{}\t '.format(_class[0])
log_txt += 'all_classes\t all_classes(fw)\n'
log_txt += 'recall\t'
for _class in classes:
log_txt += '{:.5f}\t'.format(avg_mean_acc[_class[0]])
log_txt += '{:.5f}\t{:.5f}\n'.format(np.mean(mean_acc),
np.mean(pix_acc))
log_txt += 'precision\t'
for _class in classes:
log_txt += '{:.5f}\t'.format(avg_mean_IU[_class[0]])
log_txt += '{:.5f}\t{:.5f}\n'.format(np.mean(mean_IU), np.mean(fw_IU))
print_and_write(log_txt, log_fname)
# fw_sum_total = np.sum(fw_sum)
# fw_sum_frac = fw_sum / float(fw_sum_total)
# print('fw_sum_total: {}'.format(fw_sum_total))
# print('fw_sum_frac: {}'.format(fw_sum_frac))
print('Wrote log to: {}'.format(log_fname))
def run(params):
"""
:param StitchParams params:
:return:
"""
video_exts = ['mp4', 'mkv', 'avi', 'mpg', 'mpeg', 'mjpg']
# if not params.src_path:
# assert params.db_root_dir, "either params.src_path or params.db_root_dir must be provided"
#
# params.src_path = os.path.join(params.db_root_dir, params.seq_name, 'images')
print('Reading source images from: {}'.format(params.src_path))
src_files = [
k for k in os.listdir(params.src_path)
if k.endswith('.{:s}'.format(params.images_ext))
]
total_frames = len(src_files)
# print('file_list: {}'.format(file_list))
if total_frames <= 0:
print('params: {}'.format(params))
raise SystemError('No input frames of type {} found'.format(
params.images_ext))
print('total_frames: {}'.format(total_frames))
classes, composite_classes = read_class_info(params.class_info_path)
n_classes = len(classes)
class_ids = list(range(n_classes))
src_files.sort(key=sort_key)
if params.n_frames <= 0:
params.n_frames = total_frames
if params.end_id < params.start_id:
params.end_id = params.n_frames - 1
if params.patch_width <= 0:
params.patch_width = params.patch_height
if not params.patch_seq_path:
if not params.patch_seq_name:
params.patch_seq_name = '{:s}_{:d}_{:d}_{:d}_{:d}_{:d}_{:d}'.format(
params.seq_name, params.start_id, params.end_id,
params.patch_height, params.patch_width, params.patch_height,
params.patch_width)
params.patch_seq_path = os.path.join(params.db_root_dir,
params.patch_seq_name,
params.patch_seq_type)
if not os.path.isdir(params.patch_seq_path):
raise SystemError(
'params.patch_seq_path does not exist: {}'.format(
params.patch_seq_path))
else:
params.patch_seq_name = os.path.basename(params.patch_seq_path)
if not params.stitched_seq_path:
stitched_seq_name = '{}_stitched_{}'.format(params.patch_seq_name,
params.method)
if params.stacked:
stitched_seq_name = '{}_stacked'.format(stitched_seq_name)
params.method = 1
stitched_seq_name = '{}_{}_{}'.format(stitched_seq_name,
params.start_id, params.end_id)
params.stitched_seq_path = os.path.join(params.db_root_dir,
stitched_seq_name,
params.patch_seq_type)
gt_labels_orig = gt_labels = video_out = None
write_to_video = params.out_ext in video_exts
if write_to_video:
if not params.stitched_seq_path.endswith('.{}'.format(params.out_ext)):
params.stitched_seq_path = '{}.{}'.format(params.stitched_seq_path,
params.out_ext)
print('Writing {}x{} output video to: {}'.format(
params.width, params.height, params.stitched_seq_path))
save_dir = os.path.dirname(params.stitched_seq_path)
fourcc = cv2.VideoWriter_fourcc(*params.codec)
video_out = cv2.VideoWriter(params.stitched_seq_path, fourcc,
params.fps, (params.width, params.height))
else:
print('Writing output images to: {}'.format(params.stitched_seq_path))
save_dir = params.stitched_seq_path
if save_dir and not os.path.isdir(save_dir):
os.makedirs(save_dir)
log_fname = os.path.join(save_dir, 'log_{:s}.txt'.format(getDateTime()))
print_and_write('Saving log to: {}'.format(log_fname), log_fname)
print_and_write(
'Reading patch images from: {}'.format(params.patch_seq_path),
log_fname)
n_patches = 0
pause_after_frame = 1
label_diff = int(255.0 / (params.n_classes - 1))
eval_mode = False
if params.labels_path and params.labels_ext:
_, labels_list, labels_total_frames = read_data(
labels_path=params.labels_path, labels_ext=params.labels_ext)
if labels_total_frames != total_frames:
raise SystemError(
'Mismatch between no. of frames in GT and seg labels')
eval_mode = True
import densenet.evaluation.eval_segm as eval_segm
avg_pix_acc = avg_mean_acc = avg_mean_IU = avg_fw_IU = 0
avg_mean_acc_ice = avg_mean_acc_ice_1 = avg_mean_acc_ice_2 = 0
avg_mean_IU_ice = avg_mean_IU_ice_1 = avg_mean_IU_ice_2 = 0
skip_mean_acc_ice_1 = skip_mean_acc_ice_2 = 0
skip_mean_IU_ice_1 = skip_mean_IU_ice_2 = 0
_n_frames = params.end_id - params.start_id + 1
for img_id in range(params.start_id, params.end_id + 1):
# img_fname = '{:s}_{:d}.{:s}'.format(params.fname_templ, img_id + 1, params.img_ext)
img_fname = src_files[img_id]
img_fname_no_ext = os.path.splitext(img_fname)[0]
src_img_fname = os.path.join(params.src_path, img_fname)
src_img = cv2.imread(src_img_fname)
if src_img is None:
raise SystemError('Source image could not be read from: {}'.format(
src_img_fname))
n_rows, n_cols, n_channels = src_img.shape
# np.savetxt(os.path.join(params.db_root_dir, params.seq_name, 'labels_img_{}.txt'.format(img_id + 1)),
# labels_img[:, :, 2], fmt='%d')
out_id = 0
# skip_id = 0
min_row = 0
enable_stitching = 1
if params.method == -1:
patch_src_img_fname = os.path.join(
params.patch_seq_path,
'{:s}.{:s}'.format(img_fname_no_ext, params.patch_ext))
if not os.path.exists(patch_src_img_fname):
raise SystemError('Patch image does not exist: {}'.format(
patch_src_img_fname))
stitched_img = cv2.imread(patch_src_img_fname)
enable_stitching = 0
elif params.method == 0:
stitched_img = None
else:
stitched_img = np.zeros((n_rows, n_cols, n_channels),
dtype=np.uint8)
while enable_stitching:
max_row = min_row + params.patch_height
if max_row > n_rows:
diff = max_row - n_rows
min_row -= diff
max_row -= diff
curr_row = None
min_col = 0
while True:
max_col = min_col + params.patch_width
if max_col > n_cols:
diff = max_col - n_cols
min_col -= diff
max_col -= diff
patch_img_fname = '{:s}_{:d}'.format(img_fname_no_ext,
out_id + 1)
patch_src_img_fname = os.path.join(
params.patch_seq_path,
'{:s}.{:s}'.format(patch_img_fname, params.patch_ext))
if not os.path.exists(patch_src_img_fname):
raise SystemError('Patch image does not exist: {}'.format(
patch_src_img_fname))
src_patch = cv2.imread(patch_src_img_fname)
seg_height, seg_width, _ = src_patch.shape
if seg_width == 2 * params.patch_width or seg_width == 3 * params.patch_width:
_start_id = seg_width - params.patch_width
src_patch = src_patch[:, _start_id:]
if params.normalize_patches:
src_patch = (src_patch * label_diff).astype(np.uint8)
# print('max(src_patch): {}'.format(np.max(src_patch)))
# print('min(src_patch): {}'.format(np.min(src_patch)))
out_id += 1
if params.method == 0:
if curr_row is None:
curr_row = src_patch
else:
curr_row = np.concatenate((curr_row, src_patch),
axis=1)
else:
stitched_img[min_row:max_row,
min_col:max_col, :] = src_patch
if params.show_img:
disp_img = src_img.copy()
cv2.rectangle(disp_img, (min_col, min_row),
(max_col, max_row), (255, 0, 0), 2)
stitched_img_disp = stitched_img
if params.disp_resize_factor != 1:
disp_img = cv2.resize(disp_img, (0, 0),
fx=params.disp_resize_factor,
fy=params.disp_resize_factor)
if stitched_img_disp is not None:
stitched_img_disp = cv2.resize(
stitched_img_disp, (0, 0),
fx=params.disp_resize_factor,
fy=params.disp_resize_factor)
cv2.imshow('disp_img', disp_img)
cv2.imshow('src_patch', src_patch)
if stitched_img_disp is not None:
cv2.imshow('stacked_img', stitched_img_disp)
if curr_row is not None:
cv2.imshow('curr_row', curr_row)
k = cv2.waitKey(1 - pause_after_frame)
if k == 27:
sys.exit(0)
elif k == 32:
pause_after_frame = 1 - pause_after_frame
# sys.stdout.write('\rDone {:d} patches in frame {:d}'.format(out_id, img_id + 1))
# sys.stdout.flush()
if max_col >= n_cols:
break
min_col = max_col
if params.method == 0:
if stitched_img is None:
stitched_img = curr_row
else:
stitched_img = np.concatenate((stitched_img, curr_row),
axis=0)
if max_row >= n_rows:
break
min_row = max_row
if eval_mode:
labels_img_fname = os.path.join(
params.labels_path,
img_fname_no_ext + '.{}'.format(params.labels_ext))
gt_labels_orig = imageio.imread(labels_img_fname)
if gt_labels_orig is None:
raise SystemError(
'Labels image could not be read from: {}'.format(
labels_img_fname))
if len(gt_labels_orig.shape) == 3:
gt_labels = np.squeeze(gt_labels_orig[:, :, 0])
else:
gt_labels = gt_labels_orig
seg_labels = np.squeeze(stitched_img[:, :, 0])
pix_acc = eval_segm.pixel_accuracy(seg_labels, gt_labels,
class_ids)
_acc, mean_acc = eval_segm.mean_accuracy(seg_labels,
gt_labels,
class_ids,
return_acc=1)
_IU, mean_IU = eval_segm.mean_IU(seg_labels,
gt_labels,
class_ids,
return_iu=1)
fw_IU = eval_segm.frequency_weighted_IU(seg_labels, gt_labels,
class_ids)
avg_pix_acc += (pix_acc - avg_pix_acc) / (img_id + 1)
avg_mean_acc += (mean_acc - avg_mean_acc) / (img_id + 1)
avg_mean_IU += (mean_IU - avg_mean_IU) / (img_id + 1)
avg_fw_IU += (fw_IU - avg_fw_IU) / (img_id + 1)
# print('_acc: {}'.format(_acc))
# print('_IU: {}'.format(_IU))
mean_acc_ice = np.mean(list(_acc.values())[1:])
avg_mean_acc_ice += (mean_acc_ice - avg_mean_acc_ice) / (img_id +
1)
try:
mean_acc_ice_1 = _acc[1]
avg_mean_acc_ice_1 += (mean_acc_ice_1 - avg_mean_acc_ice_1) / (
img_id - skip_mean_acc_ice_1 + 1)
except KeyError:
print('\nskip_mean_acc_ice_1: {}'.format(img_id))
skip_mean_acc_ice_1 += 1
try:
mean_acc_ice_2 = _acc[2]
avg_mean_acc_ice_2 += (mean_acc_ice_2 - avg_mean_acc_ice_2) / (
img_id - skip_mean_acc_ice_2 + 1)
except KeyError:
print('\nskip_mean_acc_ice_2: {}'.format(img_id))
skip_mean_acc_ice_2 += 1
mean_IU_ice = np.mean(list(_IU.values())[1:])
avg_mean_IU_ice += (mean_IU_ice - avg_mean_IU_ice) / (img_id + 1)
try:
mean_IU_ice_1 = _IU[1]
avg_mean_IU_ice_1 += (mean_IU_ice_1 - avg_mean_IU_ice_1) / (
img_id - skip_mean_IU_ice_1 + 1)
except KeyError:
print('\nskip_mean_IU_ice_1: {}'.format(img_id))
skip_mean_IU_ice_1 += 1
try:
mean_IU_ice_2 = _IU[2]
avg_mean_IU_ice_2 += (mean_IU_ice_2 - avg_mean_IU_ice_2) / (
img_id - skip_mean_IU_ice_2 + 1)
except KeyError:
print('\nskip_mean_IU_ice_2: {}'.format(img_id))
skip_mean_IU_ice_2 += 1
log_txt = '\nDone {:d}/{:d} frames '.format(
img_id - params.start_id + 1, _n_frames)
log_txt += "pix_acc: {:.5f} mean_acc: {:.5f} mean_IU: {:.5f} fw_IU: {:.5f}" \
" avg_acc_ice: {:.5f} avg_acc_ice_1: {:.5f} avg_acc_ice_2: {:.5f}" \
" avg_IU_ice: {:.5f} avg_IU_ice_1: {:.5f} avg_IU_ice_2: {:.5f}".format(
avg_pix_acc, avg_mean_acc, avg_mean_IU, avg_fw_IU,
avg_mean_acc_ice, avg_mean_acc_ice_1, avg_mean_acc_ice_2,
avg_mean_IU_ice, avg_mean_IU_ice_1, avg_mean_IU_ice_2,
)
print_and_write(log_txt, log_fname)
else:
sys.stdout.write('\rDone {:d}/{:d} frames'.format(
img_id + 1 - params.start_id, _n_frames))
sys.stdout.flush()
if not params.normalize_patches:
# print('max(stitched_img): {:d}'.format(int(np.max(stitched_img))))
# print('max(stitched_img): {:d}'.format(int(np.max(stitched_img))))
# print('min(stitched_img): {:d}'.format(int(np.min(stitched_img))))
# print('label_diff: {}'.format(label_diff))
seg_img = (stitched_img * label_diff).astype(np.uint8)
# print('max(seg_img): {:d}'.format(int(np.max(seg_img))))
# print('min(seg_img): {:d}'.format(int(np.min(seg_img))))
# np.savetxt('/home/abhineet/seg_img_{}.data'.format(img_id), np.squeeze(seg_img[:, :, 0]).astype(
# np.float64), fmt='%f')
# np.savetxt('/home/abhineet/stitched_img_{}.data'.format(img_id), np.squeeze(stitched_img[:, :,
# 0]).astype(np.float64), fmt='%f')
# seg_img = seg_img.astype(np.uint8)
else:
seg_img = stitched_img
if params.stacked:
# print('stitched_img.shape', stitched_img.shape)
# print('src_img.shape', src_img.shape)
if eval_mode:
labels_img = (gt_labels_orig * label_diff).astype(np.uint8)
stitched = np.concatenate((src_img, labels_img), axis=1)
else:
stitched = src_img
out_img = np.concatenate((stitched, seg_img), axis=1)
else:
out_img = seg_img
if write_to_video:
out_img = resize_ar(out_img, params.width, params.height)
video_out.write(out_img)
# statinfo = os.stat(params.stitched_seq_path)
# print('\nvideo_size: {}'.format(statinfo.st_size))
else:
if params.resize_factor != 1:
out_img = cv2.resize(out_img, (0, 0),
fx=params.resize_factor,
fy=params.resize_factor)
stacked_img_path = os.path.join(
params.stitched_seq_path,
'{}.{}'.format(img_fname_no_ext, params.out_ext))
cv2.imwrite(stacked_img_path, out_img)
n_patches += out_id
sys.stdout.write('\n')
sys.stdout.flush()
sys.stdout.write('Total patches processed: {}\n'.format(n_patches))
if params.show_img:
cv2.destroyAllWindows()
if write_to_video:
video_out.release()
if params.del_patch_seq:
print('Removing patch folder {}'.format(params.patch_seq_path))
shutil.rmtree(params.patch_seq_path)
if eval_mode:
log_txt = "pix_acc\t mean_acc\t mean_IU\t fw_IU\n{:.5f}\t{:.5f}\t{:.5f}\t{:.5f}\n".format(
avg_pix_acc, avg_mean_acc, avg_mean_IU, avg_fw_IU)
log_txt += "mean_acc_ice\t mean_acc_ice_1\t mean_acc_ice_2\n{:.5f}\t{:.5f}\t{:.5f}\n".format(
avg_mean_acc_ice, avg_mean_acc_ice_1, avg_mean_acc_ice_2)
log_txt += "mean_IU_ice\t mean_IU_ice_1\t mean_IU_ice_2\n{:.5f}\t{:.5f}\t{:.5f}\n".format(
avg_mean_IU_ice, avg_mean_IU_ice_1, avg_mean_IU_ice_2)
print_and_write(log_txt, log_fname)
print_and_write('Saved log to: {}'.format(log_fname), log_fname)
print_and_write(
'Read patch images from: {}'.format(params.patch_seq_path),
log_fname)
'Labels image could not be read from: {}'.format(
labels_img_fname))
if len(gt_labels_orig.shape) == 3:
gt_labels = np.squeeze(gt_labels_orig[:, :, 0])
else:
gt_labels = gt_labels_orig
seg_labels = np.squeeze(stitched_img[:, :, 0])
pix_acc = eval_segm.pixel_accuracy(seg_labels, gt_labels)
_acc, mean_acc = eval_segm.mean_accuracy(seg_labels,
gt_labels,
return_acc=1)
_IU, mean_IU = eval_segm.mean_IU(seg_labels,
gt_labels,
return_iu=1)
fw_IU = eval_segm.frequency_weighted_IU(seg_labels, gt_labels)
avg_pix_acc += (pix_acc - avg_pix_acc) / (img_id + 1)
avg_mean_acc += (mean_acc - avg_mean_acc) / (img_id + 1)
avg_mean_IU += (mean_IU - avg_mean_IU) / (img_id + 1)
avg_fw_IU += (fw_IU - avg_fw_IU) / (img_id + 1)
# print('_acc: {}'.format(_acc))
# print('_IU: {}'.format(_IU))
mean_acc_ice = np.mean(list(_acc.values())[1:])
avg_mean_acc_ice += (mean_acc_ice - avg_mean_acc_ice) / (img_id +
1)
try: