def main(servername, credentialsfilename, catalog):
def apply(catalog, goal):
"""
Apply the goal configuration to live catalog
"""
print 'applying...'
counter = 0
ready = False
while ready == False:
try:
catalog.applyCatalogConfig(goal)
ready = True
except HTTPError as err:
print err
print err.errno
if err.errno == CONFLICT:
et, ev, tb = sys.exc_info()
print 'Conflict Exception "%s"' % str(ev)
counter = counter + 1
if counter >= 5:
print '%s' % str(traceback.format_exception(et, ev, tb))
ready = True
else:
print 'Retrying...'
except:
et, ev, tb = sys.exc_info()
print str(et)
print 'Exception "%s"' % str(ev)
print '%s' % str(traceback.format_exception(et, ev, tb))
ready = True
credentials = json.load(open(credentialsfilename))
catalog = ErmrestCatalog('https', servername, catalog, credentials)
try:
goal = catalog.get_catalog_model()
except AttributeError:
try:
goal = catalog.getCatalogModel()
except:
et, ev, tb = sys.exc_info()
print 'got exception "%s"' % str(ev)
print '%s' % str(traceback.format_exception(et, ev, tb))
sys.exit(1)
schema_name = 'Microscopy'
table_name = 'Slide'
column_name = 'Label'
goal.column(schema_name, table_name, column_name).column_display.update({
"compact": {"markdown_pattern": "{{#Label}}:::iframe [](/chaise/PrintLabel.html?label=/microscopy/printer/slide/job?{{{Label}}}){height=75 width=150 style=\"border-style: none; border-color: rgb(153, 153, 153);\" .iframe} \n:::{{/Label}}"},
"detailed": {"markdown_pattern": "{{#Label}}:::iframe [](/chaise/PrintLabel.html?label=/microscopy/printer/slide/job?{{{Label}}}){height=75 width=150 style=\"border-style: none; border-color: rgb(153, 153, 153);\" .iframe} \n:::{{/Label}}"}
})
apply(catalog, goal)
print 'Successfully updated the URL annotation for the column %s' % column_name
def main(servername, credentialsfilename, catalog):
asset = {
"tag:isrd.isi.edu,2017:asset": {
"sha256": "checksum",
"url_pattern": "/hatrac/Microscopy/{{{slide_id}}}/{{{filename}}}",
"filename_column": "filename",
"byte_count_column": "bytes"
}
}
def apply(catalog, goal):
"""
Apply the goal configuration to live catalog
"""
print('applying...')
counter = 0
ready = False
while ready == False:
try:
catalog.applyCatalogConfig(goal)
ready = True
except HTTPError as err:
print(err)
print(err.errno)
if err.errno == CONFLICT:
et, ev, tb = sys.exc_info()
print('Conflict Exception "%s"' % str(ev))
counter = counter + 1
if counter >= 5:
print('%s' %
str(traceback.format_exception(et, ev, tb)))
ready = True
else:
print('Retrying...')
except:
et, ev, tb = sys.exc_info()
print(str(et))
print('Exception "%s"' % str(ev))
print('%s' % str(traceback.format_exception(et, ev, tb)))
ready = True
credentials = json.load(open(credentialsfilename))
catalog = ErmrestCatalog('https', servername, catalog, credentials)
try:
goal = catalog.get_catalog_model()
except AttributeError:
try:
goal = catalog.getCatalogModel()
except:
et, ev, tb = sys.exc_info()
print('got exception "%s"' % str(ev))
print('%s' % str(traceback.format_exception(et, ev, tb)))
sys.exit(1)
schema_name = 'Microscopy'
table_name = 'Scan'
column_name = 'HTTP URL'
annotations = goal.column(schema_name, table_name, column_name).annotations
annotations.update(asset)
apply(catalog, goal)
print('Successfully updated the asset annotation for the column %s' %
column_name)
