def amend_datacite_doi(publication):
"""Amend a citation on DataCite
Use the published project to update the DOI on Datacite
Note: This assumes that the DOI being updated is related to the project.
We may want to change this to accept dict objects which are being amended.
:param elasticsearch publication: Publication to amend
"""
# Only amend doi while in prod
if getattr(settings, 'DESIGNSAFE_ENVIRONMENT', 'dev') != 'default':
return
pub_dict = publication.to_dict()
project_type = pub_dict['project']['value']['projectType']
if project_type == 'other':
prj_class = lookup_model(pub_dict['project'])
project = prj_class(value=pub_dict['project']['value'], uuid=pub_dict['project']['uuid'])
prj_datacite_json = project.to_datacite_json()
prj_doi = project.dois[0]
DataciteManager.create_or_update_doi(prj_datacite_json, prj_doi)
else:
for field in publication.entity_keys(publishable=True):
for ent in pub_dict[field]:
ent_class = lookup_model(ent)
entity = ent_class(value=ent['value'], uuid=ent['uuid'])
entity.authors = ent['authors'] # swap author formats before creating json
ent_datacite_json = entity.to_datacite_json()
ent_doi = entity.dois[0]
DataciteManager.create_or_update_doi(ent_datacite_json, ent_doi)
def related_entities(self, offset=0, limit=100):
from designsafe.apps.projects.models.utils import lookup_model
relattrs = self._meta._reverse_fields
rel_names = [getattr(self, attrname).related_obj_name for attrname in relattrs \
if getattr(self, attrname).related_obj_name != 'designsafe.file']
resp = self.manager().agave_client.meta.listMetadata(
q=json.dumps({'name': {'$in': rel_names}, 'associationIds': self.uuid}),
offset=offset,
limit=limit)
ents = [lookup_model(rsp)(**rsp) for rsp in resp]
return ents
def handle(self, *args, **options):
project_id = options.get('project_id', '').upper()
prj = self.get_project(project_id)
#self.stdout.write('getting entities')
rel_names = self.get_related_entities_names()
#self.stdout.write('rel_names: %s' % rel_names)
entities = self.client.meta.listMetadata(q=json.dumps(
{'name': {'$in': rel_names}, 'associationIds': prj.uuid}))
self.stdout.write('entities length: %d' % len(entities))
for entity in entities:
cls = lookup_model(entity)
ent = cls(**entity)
self.stdout.write('Entity: %s' % ent.uuid)
self._check_related_uuids(ent)
def get_project(self, project_id):
client = self.get_client()
res = []
if project_id.startswith('PRJ-'):
res = client.meta.listMetadata(q=json.dumps(
{"value.projectId": project_id}))
#prj = Project._meta.model_manager.get(client, project_id=project_id)
else:
#prj = Project._meta.model_manager.get(client, uuid=options.get('project_id'))
res = client.meta.getMetadata(uuid=project_id)
if len(res):
cls = lookup_model(res[0])
prj = cls(**res[0])
self.prj = prj
return prj
else:
raise ValueError('No project found')