def select_modeller():
if model == 'constant2d':
return Constant2dModeller()
elif model == 'constant3d':
return Constant3dModeller()
elif model == 'linear2d':
return Linear2dModeller()
elif model == 'linear3d':
return Linear3dModeller()
raise RuntimeError("Unexpected background model: %s" % model)
def test_constant3d_modeller(self):
from dials.algorithms.background.simple import Constant3dModeller
modeller = Constant3dModeller()
eps = 1e-7
for i in range(10):
c, data, mask = self.generate_constant_background_3d(self.size, 0, 100)
model = modeller.create(data, mask)
assert(len(model.params()) == 1)
for j in range(1):
assert(abs(model.params()[j] - c) < eps)
def select_modeller():
if model == "constant2d":
return Constant2dModeller()
elif model == "constant3d":
return Constant3dModeller()
elif model == "linear2d":
return Linear2dModeller()
elif model == "linear3d":
return Linear3dModeller()
raise RuntimeError(f"Unexpected background model: {model}")
def run(self):
from dials.algorithms.background.simple import Creator
from dials.algorithms.background.simple import Constant3dModeller
from dials.algorithms.background.simple import TruncatedOutlierRejector
from dials.algorithms.background.simple import NSigmaOutlierRejector
from dials.algorithms.background.simple import NormalOutlierRejector
modeller = Constant3dModeller()
outlier_rejector = [
None,
TruncatedOutlierRejector(0.01, 0.01),
NSigmaOutlierRejector(3.0, 3.0),
NormalOutlierRejector(10),
]
for rejector in outlier_rejector:
self.tst(Creator(modeller, rejector))
def test_constant3d_modeller(self):
from dials.algorithms.background.simple import Constant3dModeller
from dials.array_family import flex
modeller = Constant3dModeller()
ma = 10
sboxes, masks = self.generate_background(self.size, 1000, ma, 0, 0, 0)
a = []
v = []
for i in range(1000):
model = modeller.create(sboxes[i], masks[i])
assert(len(model.params()) == 1)
assert(len(model.variances()) == 1)
a.append(model.params()[0])
v.append(model.variances()[0])
# Compute Z for each parameter
z = (flex.double(a) - ma) / flex.sqrt(flex.double(v))
# Check it looks standard normal
self.assert_std_norm(z)